Variant report

Variant	rs7739791
Chromosome Location	chr6:139921958-139921959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139692879..139695296-chr6:139920073..139922269,2	MCF-7	breast:
2	chr6:139921239..139922852-chr6:139929275..139931203,2	K562	blood:
3	chr6:139914136..139915805-chr6:139921173..139922763,2	K562	blood:
4	chr6:139911361..139914262-chr6:139921239..139923809,2	K562	blood:
5	chr6:139692350..139696074-chr6:139919477..139924298,5	MCF-7	breast:
6	chr6:139920565..139922279-chr6:139926729..139929215,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10872521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1936207	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2185922	0.81[AMR][1000 genomes]
rs4895570	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4895571	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896481	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896482	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6570366	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6914856	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs727098	0.84[CEU][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7357040	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7763275	0.82[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs9321730	0.84[JPT][hapmap]
rs9484296	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9495541	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9495545	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9495546	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139907600-139925200	Weak transcription	Aorta	Aorta
2	chr6:139909400-139925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:139909600-139923400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:139913000-139928600	Weak transcription	Ovary	ovary
5	chr6:139914400-139925200	Weak transcription	Spleen	Spleen
6	chr6:139916400-139922200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:139916800-139924000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:139917000-139922200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:139918600-139922000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:139918800-139925200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:139919200-139923600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:139919200-139923600	Weak transcription	Fetal Heart	heart
13	chr6:139919200-139924000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:139919400-139922200	Weak transcription	K562	blood
15	chr6:139919400-139925200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:139919400-139925200	Weak transcription	Esophagus	oesophagus
17	chr6:139919600-139922200	Weak transcription	HSMMtube	muscle
18	chr6:139919600-139923400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:139919600-139923400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:139919600-139923400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:139919600-139924000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:139919600-139925200	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:139919800-139922200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:139919800-139922200	Weak transcription	Stomach Mucosa	stomach
25	chr6:139919800-139923400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:139919800-139924000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr6:139919800-139927600	Weak transcription	Fetal Kidney	kidney
28	chr6:139919800-139928200	Weak transcription	Fetal Lung	lung
29	chr6:139920400-139925200	Weak transcription	Fetal Brain Male	brain
30	chr6:139920600-139922200	Weak transcription	Fetal Intestine Small	intestine
31	chr6:139920800-139922000	Weak transcription	Fetal Intestine Large	intestine
32	chr6:139920800-139922400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:139920800-139924800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:139920800-139924800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:139920800-139925200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:139920800-139928600	Weak transcription	Osteobl	bone
37	chr6:139921000-139925200	Weak transcription	Fetal Stomach	stomach
38	chr6:139921200-139923600	Weak transcription	Placenta	Placenta
39	chr6:139921600-139922200	Enhancers	GM12878-XiMat	blood

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