Variant report

Variant	rs7741531
Chromosome Location	chr6:56094904-56094905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16887622	0.83[AFR][1000 genomes]
rs16887633	0.83[AFR][1000 genomes]
rs16887649	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs16887677	1.00[ASW][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7744275	0.82[YRI][hapmap]
rs7768532	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56082200-56104800	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:56089200-56095800	Weak transcription	HMEC	breast
3	chr6:56089200-56097600	Weak transcription	Aorta	Aorta
4	chr6:56089400-56095600	Weak transcription	NHEK	skin
5	chr6:56089400-56096000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:56091000-56095800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:56092000-56097400	Weak transcription	Ovary	ovary
8	chr6:56092400-56095600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:56092600-56099800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:56092600-56100000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:56092800-56095000	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:56092800-56095600	Weak transcription	Fetal Lung	lung
13	chr6:56093000-56095600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:56093000-56095800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:56093000-56100000	Weak transcription	Osteobl	bone
16	chr6:56093200-56095800	Weak transcription	Fetal Stomach	stomach
17	chr6:56093200-56097000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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