Variant report

Variant	rs7741664
Chromosome Location	chr6:55105301-55105302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55103505..55105321-chr6:55107374..55109522,2	MCF-7	breast:
2	chr6:54740124..54741737-chr6:55103503..55105754,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12055777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12055778	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3122160	0.91[CHB][hapmap]
rs3134711	0.86[EUR][1000 genomes]
rs4074181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4075174	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4311511	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4496804	0.91[CHB][hapmap]
rs4530845	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs56843381	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62416801	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62416821	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6912059	1.00[YRI][hapmap]
rs6930360	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7754675	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7755590	0.94[YRI][hapmap]
rs7771240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9349768	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs9349771	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9349772	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9349773	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9349774	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357851	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357852	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9357853	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9357854	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9357855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9367625	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9367626	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9367627	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9370407	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382470	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9382471	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382472	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9396062	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs9396069	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9396070	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9396074	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9396075	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464215	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9475208	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9475211	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9475214	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55104200-55109000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:55105200-55105400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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