Variant report

Variant	rs7741846
Chromosome Location	chr6:132936061-132936062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132935279..132937061-chr6:133139072..133141964,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6569815	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7742403	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132930800-132936200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:132931600-132937000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:132932000-132937200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:132933400-132936400	Active TSS	Duodenum Mucosa	Duodenum
5	chr6:132934200-132936400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:132934800-132936400	Active TSS	Liver	Liver
7	chr6:132934800-132936600	Enhancers	NHEK	skin
8	chr6:132935000-132936600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:132935200-132937600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:132935600-132936200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:132935600-132936200	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr6:132935600-132936200	Active TSS	Rectal Mucosa Donor 31	rectum
13	chr6:132935600-132937000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:132935800-132936200	Bivalent/Poised TSS	Primary T cells fromperipheralblood	blood
15	chr6:132935800-132936200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:132935800-132936200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:132935800-132936200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:132935800-132936200	Active TSS	Colonic Mucosa	Colon
19	chr6:132935800-132936200	Active TSS	GM12878-XiMat	blood
20	chr6:132935800-132936400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:132936000-132936200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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