Variant report

Variant	rs7741930
Chromosome Location	chr6:132935865-132935866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132935279..132937061-chr6:133139072..133141964,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1081074	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28431469	0.98[ASN][1000 genomes]
rs3813353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs61745666	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7738600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7759004	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7763027	0.96[ASN][1000 genomes]
rs7764168	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7769453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9321355	1.00[CEU][hapmap]
rs9321356	1.00[CEU][hapmap]
rs9483484	0.81[CHB][hapmap];0.87[ASN][1000 genomes]
rs9483485	1.00[CEU][hapmap]
rs9483487	1.00[CEU][hapmap]
rs9493400	0.85[ASN][1000 genomes]
rs9493401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9493402	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132930800-132936200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:132931600-132937000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:132932000-132937200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:132933400-132936400	Active TSS	Duodenum Mucosa	Duodenum
5	chr6:132934200-132936400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:132934400-132936000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:132934800-132936400	Active TSS	Liver	Liver
8	chr6:132934800-132936600	Enhancers	NHEK	skin
9	chr6:132935000-132936600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:132935200-132937600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:132935400-132936000	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr6:132935600-132936000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr6:132935600-132936000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:132935600-132936000	Active TSS	Rectal Smooth Muscle	rectum
15	chr6:132935600-132936000	Active TSS	Monocytes-CD14+_RO01746	blood
16	chr6:132935600-132936200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:132935600-132936200	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr6:132935600-132936200	Active TSS	Rectal Mucosa Donor 31	rectum
19	chr6:132935600-132937000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr6:132935800-132936200	Bivalent/Poised TSS	Primary T cells fromperipheralblood	blood
21	chr6:132935800-132936200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:132935800-132936200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:132935800-132936200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:132935800-132936200	Active TSS	Colonic Mucosa	Colon
25	chr6:132935800-132936200	Active TSS	GM12878-XiMat	blood
26	chr6:132935800-132936400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links