Variant report

Variant	rs7742176
Chromosome Location	chr6:132913113-132913114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17061483	0.87[ASW][hapmap];0.88[YRI][hapmap]
rs61120361	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73553894	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73555813	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73555814	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132907000-132914800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr6:132910800-132928000	Weak transcription	Pancreas	Pancrea
3	chr6:132911200-132913400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:132911200-132914000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:132913000-132914800	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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