Variant report

Variant	rs774278
Chromosome Location	chr6:129062766-129062767
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1508444	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1508446	0.83[AMR][1000 genomes]
rs1876579	0.83[AMR][1000 genomes]
rs1911787	0.83[AMR][1000 genomes]
rs774279	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7745581	0.83[AMR][1000 genomes]
rs7763496	0.83[AMR][1000 genomes]
rs809570	0.83[AMR][1000 genomes]
rs9388664	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830801	chr6:128878436-129064667	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129058400-129064000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:129058400-129064000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:129058400-129065800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:129058600-129063800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:129061000-129064000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:129061600-129063200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
7	chr6:129062000-129062800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr6:129062200-129063000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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