Variant report

Variant	rs7743121
Chromosome Location	chr6:81348282-81348283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1077898	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1584895	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16892113	0.81[ASN][1000 genomes]
rs1823894	0.83[ASN][1000 genomes]
rs2061044	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2444810	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2444811	0.82[EUR][1000 genomes]
rs2444815	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2444823	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2444825	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2496690	0.99[ASN][1000 genomes]
rs2496691	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2496694	0.94[ASN][1000 genomes]
rs2496698	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2503751	0.94[ASN][1000 genomes]
rs2503755	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2503760	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2503761	0.81[EUR][1000 genomes]
rs3889467	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3937697	0.82[ASN][1000 genomes]
rs4571527	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57540058	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61575833	0.82[ASN][1000 genomes]
rs62424469	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62424471	0.83[ASN][1000 genomes]
rs6929266	0.82[ASN][1000 genomes]
rs6941965	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs748215	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9352846	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9361631	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1020533	chr6:81288890-81406533	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv538340	chr6:81288890-81406533	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604085	chr6:81297890-81439973	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1015520	chr6:81309213-81374699	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv886314	chr6:81341175-81379791	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81346200-81349400	Enhancers	Osteobl	bone
2	chr6:81346200-81349600	Enhancers	NHLF	lung
3	chr6:81346400-81349200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:81346400-81349200	Enhancers	NHDF-Ad	bronchial
5	chr6:81346800-81350600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:81347200-81348600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:81347200-81349400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:81347400-81348800	Enhancers	A549	lung
9	chr6:81347400-81349400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:81347600-81348800	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr6:81347800-81349000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:81347800-81349200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:81347800-81349200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:81347800-81349200	Enhancers	HMEC	breast
15	chr6:81347800-81349400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:81347800-81349400	Enhancers	NH-A	brain
17	chr6:81347800-81349800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:81348000-81348400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:81348000-81348600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:81348000-81348800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:81348000-81349000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr6:81348000-81349000	Enhancers	Stomach Mucosa	stomach
23	chr6:81348000-81349000	Enhancers	NHEK	skin
24	chr6:81348000-81349200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:81348000-81349200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:81348000-81349200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr6:81348000-81349200	Enhancers	Small Intestine	intestine
28	chr6:81348000-81349200	Enhancers	Hela-S3	cervix
29	chr6:81348000-81350600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:81348200-81348400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:81348200-81348400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr6:81348200-81349000	Enhancers	Fetal Intestine Large	intestine
33	chr6:81348200-81349000	Flanking Active TSS	HUVEC	blood vessel
34	chr6:81348200-81349200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:81348200-81349200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:81348200-81349200	Enhancers	HSMM	muscle
37	chr6:81348200-81349400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:81348200-81349400	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr6:81348200-81349600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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