Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150846296..150849812-chr6:150852359..150857324,4	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1492574	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4304173	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4478418	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6908890	0.95[CHD][hapmap];0.94[JPT][hapmap]
rs6918187	0.84[CHD][hapmap]
rs6919129	0.81[CHD][hapmap]
rs7764084	0.96[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7766048	0.83[ASN][1000 genomes]
rs7767400	0.83[ASN][1000 genomes]
rs7773743	0.83[ASN][1000 genomes]
rs9322263	0.84[CHD][hapmap]
rs9371461	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9372055	0.83[ASN][1000 genomes]
rs9372072	0.82[ASN][1000 genomes]
rs9384546	0.88[ASN][1000 genomes]
rs9384550	0.81[ASN][1000 genomes]
rs9384551	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9384556	0.80[ASN][1000 genomes]
rs9384557	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9397330	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9398010	0.82[ASN][1000 genomes]
rs9398011	0.81[ASN][1000 genomes]
rs9398017	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv464079	chr6:150836676-150873766	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv604850	chr6:150836676-150873766	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7745789	PLEKHG1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150847200-150850000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150847600-150849800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:150847800-150848000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:150847800-150850800	Enhancers	Colon Smooth Muscle	Colon

Quick Search: