Variant report

Variant	rs7746855
Chromosome Location	chr6:129070969-129070970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1082316	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1281243	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.81[EUR][1000 genomes]
rs1281244	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs1281247	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs1508448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949003	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28513684	1.00[ASN][1000 genomes]
rs55986700	1.00[ASN][1000 genomes]
rs6569556	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs72975313	1.00[ASN][1000 genomes]
rs72975384	1.00[ASN][1000 genomes]
rs72975393	1.00[ASN][1000 genomes]
rs72975394	1.00[ASN][1000 genomes]
rs72975400	1.00[ASN][1000 genomes]
rs72977310	1.00[ASN][1000 genomes]
rs774277	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs774281	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs774283	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs774289	0.81[EUR][1000 genomes]
rs7753205	1.00[ASN][1000 genomes]
rs7764078	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321130	1.00[ASN][1000 genomes]
rs9321131	0.96[EUR][1000 genomes]
rs9321132	0.96[EUR][1000 genomes]
rs9321133	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385471	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9388665	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482916	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs9482917	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9482918	1.00[ASN][1000 genomes]
rs9482919	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482920	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492055	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs9492056	1.00[CHB][hapmap]
rs9492057	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9492059	1.00[ASN][1000 genomes]
rs9492060	1.00[ASN][1000 genomes]
rs9492061	1.00[ASN][1000 genomes]
rs9492062	1.00[ASN][1000 genomes]
rs9492063	1.00[ASN][1000 genomes]
rs9492064	1.00[ASN][1000 genomes]
rs9492065	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9492066	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492067	1.00[ASN][1000 genomes]
rs9492068	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9492069	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9492070	1.00[ASN][1000 genomes]
rs9492071	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492072	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9492074	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129064400-129089200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:129068600-129071000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:129068600-129071600	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links