Variant report

Variant	rs774735
Chromosome Location	chr3:98873985-98873986
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1002155	0.91[EUR][1000 genomes]
rs1016283	0.92[EUR][1000 genomes]
rs1066363	0.81[AMR][1000 genomes]
rs1066369	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1066372	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1082505	0.83[EUR][1000 genomes]
rs1357676	0.84[EUR][1000 genomes]
rs1404103	0.84[EUR][1000 genomes]
rs1474354	0.89[EUR][1000 genomes]
rs1520690	0.83[EUR][1000 genomes]
rs1520691	0.83[EUR][1000 genomes]
rs1524217	0.91[EUR][1000 genomes]
rs1524218	0.91[EUR][1000 genomes]
rs1524219	0.87[EUR][1000 genomes]
rs1524221	0.85[EUR][1000 genomes]
rs1524222	0.85[EUR][1000 genomes]
rs1581335	0.81[AMR][1000 genomes]
rs1829934	0.90[EUR][1000 genomes]
rs1851813	0.84[EUR][1000 genomes]
rs1851818	0.84[EUR][1000 genomes]
rs1996976	0.93[EUR][1000 genomes]
rs1996977	0.93[EUR][1000 genomes]
rs2049278	0.89[EUR][1000 genomes]
rs2091127	0.82[EUR][1000 genomes]
rs2103121	0.82[EUR][1000 genomes]
rs2341713	0.87[EUR][1000 genomes]
rs2681442	0.83[EUR][1000 genomes]
rs2682413	0.83[EUR][1000 genomes]
rs2682414	0.83[EUR][1000 genomes]
rs2682418	0.95[EUR][1000 genomes]
rs2687686	0.94[EUR][1000 genomes]
rs2687688	0.94[EUR][1000 genomes]
rs2690239	0.93[EUR][1000 genomes]
rs2690240	0.93[EUR][1000 genomes]
rs2690241	0.83[EUR][1000 genomes]
rs2690242	0.93[EUR][1000 genomes]
rs2690243	0.93[EUR][1000 genomes]
rs2690248	0.83[EUR][1000 genomes]
rs2948591	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2948592	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2948597	0.87[EUR][1000 genomes]
rs2948598	0.89[EUR][1000 genomes]
rs2948599	0.89[EUR][1000 genomes]
rs2948600	0.91[EUR][1000 genomes]
rs2948601	0.90[EUR][1000 genomes]
rs2948602	0.91[EUR][1000 genomes]
rs2948603	0.92[EUR][1000 genomes]
rs2949161	0.87[EUR][1000 genomes]
rs2949167	0.89[EUR][1000 genomes]
rs2966545	0.92[EUR][1000 genomes]
rs2966547	0.92[EUR][1000 genomes]
rs2966548	0.91[EUR][1000 genomes]
rs2966550	0.89[EUR][1000 genomes]
rs2966551	0.89[EUR][1000 genomes]
rs2966552	0.89[EUR][1000 genomes]
rs704587	0.92[EUR][1000 genomes]
rs704588	0.83[EUR][1000 genomes]
rs704592	0.83[EUR][1000 genomes]
rs774732	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs774736	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs774938	0.94[EUR][1000 genomes]
rs774944	0.94[EUR][1000 genomes]
rs774948	0.94[EUR][1000 genomes]
rs774949	0.83[EUR][1000 genomes]
rs774950	0.83[EUR][1000 genomes]
rs774956	0.84[EUR][1000 genomes]
rs774957	0.84[EUR][1000 genomes]
rs774959	0.83[EUR][1000 genomes]
rs774960	0.83[EUR][1000 genomes]
rs774961	0.83[EUR][1000 genomes]
rs774964	0.82[EUR][1000 genomes]
rs953629	0.91[EUR][1000 genomes]
rs9852683	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv877215	chr3:98804408-98884699	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv999649	chr3:98815244-98947271	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv536664	chr3:98815244-98947271	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1009629	chr3:98846458-98903887	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1012264	chr3:98855069-98949409	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1012110	chr3:98855939-98900805	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1000298	chr3:98855939-98949409	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1004438	chr3:98863348-98949409	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv997372	chr3:98864056-98953749	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1008663	chr3:98867385-98953749	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv3518631	chr3:98868311-98921967	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	esv3518632	chr3:98868311-98921967	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98865000-98876800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:98867600-98875400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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