Variant report

Variant	rs7748261
Chromosome Location	chr6:163793686-163793687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10080505	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12523713	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12523978	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17176494	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2784874	0.86[ASN][1000 genomes]
rs4112651	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60332904	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6901592	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6902608	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6905884	0.83[EUR][1000 genomes]
rs6906081	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906275	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906725	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6910323	0.90[EUR][1000 genomes]
rs6914093	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6917030	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928869	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6936927	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6937072	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6937097	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73013516	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73013528	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73013553	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015316	0.88[EUR][1000 genomes]
rs7759606	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7761090	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7770852	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9456868	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9458821	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9458823	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9458825	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9458827	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9458828	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9458830	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9458837	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9458849	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9458857	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9458859	0.84[EUR][1000 genomes]
rs9654569	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv970668	chr6:163792636-163802489	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163791000-163794200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:163791000-163794200	Weak transcription	Left Ventricle	heart
3	chr6:163791000-163813000	Weak transcription	Right Atrium	heart
4	chr6:163791200-163793800	Weak transcription	Spleen	Spleen
5	chr6:163791200-163794200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:163791600-163793800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:163792200-163794200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:163792400-163796200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:163792400-163796400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:163792800-163794000	Weak transcription	Brain Substantia Nigra	brain

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