Variant report

Variant	rs7748307
Chromosome Location	chr6:81253892-81253893
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72905925	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv463908	chr6:81232993-81287675	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv604054	chr6:81232993-81287675	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81251000-81258000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:81251400-81259000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:81251800-81254600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:81251800-81260600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:81252000-81254200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:81252200-81254200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:81252200-81257800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:81252600-81254800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:81252800-81255800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:81253000-81254000	Enhancers	NHEK	skin
11	chr6:81253000-81254200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr6:81253000-81254400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:81253000-81254600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:81253000-81254600	Enhancers	NH-A	brain
15	chr6:81253000-81257400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:81253400-81254000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:81253400-81254000	Flanking Active TSS	Osteobl	bone
18	chr6:81253400-81254200	Flanking Active TSS	HSMMtube	muscle
19	chr6:81253400-81254600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:81253400-81255200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:81253600-81254000	Enhancers	H9 Cell Line	embryonic stem cell
22	chr6:81253600-81254000	Enhancers	HMEC	breast
23	chr6:81253600-81254600	Enhancers	Fetal Muscle Leg	muscle
24	chr6:81253600-81254600	Enhancers	NHLF	lung
25	chr6:81253600-81254800	Flanking Active TSS	HSMM	muscle
26	chr6:81253600-81257000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:81253600-81257800	Enhancers	NHDF-Ad	bronchial
28	chr6:81253800-81254000	Flanking Active TSS	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links