Variant report

Variant	rs7748587
Chromosome Location	chr6:101085108-101085109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10485139	0.96[AFR][1000 genomes]
rs12660722	0.96[AFR][1000 genomes]
rs12665693	0.96[AFR][1000 genomes]
rs17060858	0.96[AFR][1000 genomes]
rs17060862	0.96[AFR][1000 genomes]
rs17060869	0.96[AFR][1000 genomes]
rs6903356	1.00[AFR][1000 genomes]
rs6908889	1.00[AMR][1000 genomes]
rs6910914	0.92[AFR][1000 genomes]
rs6912723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6913463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6920040	1.00[AMR][1000 genomes]
rs6923676	1.00[AFR][1000 genomes]
rs6938152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7747613	0.96[AFR][1000 genomes]
rs7752319	1.00[AMR][1000 genomes]
rs7752639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7753015	0.96[AFR][1000 genomes]
rs7755099	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755630	1.00[AMR][1000 genomes]
rs7756451	0.92[AFR][1000 genomes]
rs7762637	0.92[AFR][1000 genomes]
rs7766396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7770291	1.00[AMR][1000 genomes]
rs7772262	0.96[AFR][1000 genomes]
rs7773345	0.96[AFR][1000 genomes]
rs9485269	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028016	chr6:101001055-101158822	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886445	chr6:101004751-101240763	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886447	chr6:101018032-101091434	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886448	chr6:101018032-101123503	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv886449	chr6:101018032-101147095	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886450	chr6:101018032-101168137	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886451	chr6:101018032-101172328	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv886452	chr6:101018032-101192051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv886453	chr6:101018032-101203051	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv470848	chr6:101036713-101102584	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv463988	chr6:101036713-101158950	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv604266	chr6:101036713-101158950	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv1840320	chr6:101039215-101102585	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv604268	chr6:101049108-101091434	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv886454	chr6:101049108-101123503	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv886455	chr6:101049108-101203051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv886456	chr6:101049108-101277926	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	esv1835914	chr6:101054054-101094554	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv1836506	chr6:101054054-101094554	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv463990	chr6:101058886-101123503	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv604269	chr6:101058886-101123503	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv604270	chr6:101058886-101196080	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv604271	chr6:101072307-101158950	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	nsv463991	chr6:101072307-101196080	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	nsv604272	chr6:101072307-101196080	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
27	nsv463992	chr6:101072307-101197953	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	nsv604273	chr6:101072307-101197953	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	nsv604274	chr6:101078718-101196080	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101025800-101099800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:101032400-101102000	Weak transcription	Thymus	Thymus
3	chr6:101032400-101104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:101032600-101102000	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:101032600-101110400	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:101034400-101092400	Weak transcription	Pancreas	Pancrea
7	chr6:101037400-101110600	Weak transcription	K562	blood
8	chr6:101037800-101107200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:101062600-101101600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:101062800-101094200	Weak transcription	Fetal Stomach	stomach
11	chr6:101062800-101097000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:101063800-101102600	Weak transcription	Small Intestine	intestine
13	chr6:101065400-101092400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:101066400-101086000	Weak transcription	Colonic Mucosa	Colon
15	chr6:101067600-101102200	Weak transcription	Right Ventricle	heart
16	chr6:101068400-101106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:101068800-101093200	Weak transcription	Esophagus	oesophagus
18	chr6:101069800-101085600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:101070200-101094200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:101070400-101092400	Weak transcription	Fetal Intestine Small	intestine
21	chr6:101070400-101092600	Weak transcription	Lung	lung
22	chr6:101070400-101094600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:101070400-101096200	Weak transcription	Spleen	Spleen
24	chr6:101070400-101100000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:101071600-101094400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:101071600-101104600	Weak transcription	Brain Angular Gyrus	brain
27	chr6:101071600-101127800	Weak transcription	Hela-S3	cervix
28	chr6:101071800-101099200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:101073800-101086000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:101075400-101091000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr6:101075600-101100000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:101075800-101086400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:101076200-101086400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:101076400-101107200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:101076400-101110400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:101076600-101086600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr6:101076600-101090600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr6:101076600-101092400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:101076600-101094400	Weak transcription	Aorta	Aorta
40	chr6:101076800-101086400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr6:101077000-101085200	Weak transcription	NHLF	lung
42	chr6:101077200-101085200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:101077200-101085600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:101077200-101092400	Weak transcription	HUVEC	blood vessel
45	chr6:101077400-101085600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr6:101081200-101106000	Weak transcription	Fetal Brain Male	brain
47	chr6:101081400-101099200	Weak transcription	NHEK	skin
48	chr6:101081400-101100000	Weak transcription	HepG2	liver
49	chr6:101081600-101085200	Weak transcription	HMEC	breast
50	chr6:101081600-101110800	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links