Variant report

Variant	rs7748613
Chromosome Location	chr6:150983567-150983568
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150982869..150985340-chr6:150985871..150988445,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7738394	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7749222	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9371467	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150959800-150987400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150964800-150987400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:150971600-150985400	Strong transcription	Primary B cells from peripheral blood	blood
4	chr6:150971600-150986800	Weak transcription	Left Ventricle	heart
5	chr6:150974800-150988600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:150975600-151002800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:150975800-150988400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:150976000-150988600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:150977800-150988800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:150977800-150989200	Weak transcription	HUVEC	blood vessel
11	chr6:150979400-150987000	Weak transcription	Right Atrium	heart
12	chr6:150979600-150983600	Enhancers	Fetal Stomach	stomach
13	chr6:150980600-150987000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:150980600-150988400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:150980600-150988800	Weak transcription	Fetal Brain Female	brain
16	chr6:150980600-151008800	Weak transcription	Gastric	stomach
17	chr6:150980800-150985800	Weak transcription	Lung	lung
18	chr6:150980800-150987000	Weak transcription	Brain Substantia Nigra	brain
19	chr6:150980800-150987000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:150980800-150987000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:150980800-150987400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:150980800-150989000	Weak transcription	Small Intestine	intestine
23	chr6:150980800-150989600	Weak transcription	Brain Anterior Caudate	brain
24	chr6:150980800-150989600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:150980800-151014800	Weak transcription	Pancreas	Pancrea
26	chr6:150981000-150985200	Weak transcription	Fetal Intestine Small	intestine
27	chr6:150981000-150987000	Weak transcription	Stomach Mucosa	stomach
28	chr6:150981000-150988800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:150981000-150989400	Weak transcription	Liver	Liver
30	chr6:150981200-150983800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr6:150981200-150987200	Weak transcription	Fetal Kidney	kidney
32	chr6:150981200-150988400	Weak transcription	Fetal Heart	heart
33	chr6:150981200-150988800	Weak transcription	HMEC	breast
34	chr6:150981200-150989200	Weak transcription	Fetal Intestine Large	intestine
35	chr6:150982000-150985200	Strong transcription	Fetal Thymus	thymus
36	chr6:150982200-150987200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr6:150982400-150987000	Weak transcription	Spleen	Spleen
38	chr6:150982600-150986400	Strong transcription	Primary B cells from cord blood	blood
39	chr6:150982800-150986200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:150982800-150986800	Weak transcription	Fetal Muscle Leg	muscle
41	chr6:150983000-150984000	Strong transcription	Thymus	Thymus
42	chr6:150983000-150987000	Weak transcription	Fetal Lung	lung
43	chr6:150983400-150987000	Weak transcription	Placenta	Placenta

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