Variant report

Variant	rs7748964
Chromosome Location	chr6:56154769-56154770
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56106753..56107362-chr6:56154583..56155363,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs4075390	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4128443	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4302670	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4348306	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4401668	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4432980	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4455670	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4596476	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4602722	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4712129	0.88[ASN][1000 genomes]
rs4715608	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715615	0.88[ASN][1000 genomes]
rs6459143	0.96[ASN][1000 genomes]
rs6908492	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6916683	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918390	0.88[ASN][1000 genomes]
rs6918405	0.88[ASN][1000 genomes]
rs6918460	0.88[ASN][1000 genomes]
rs6918489	0.88[ASN][1000 genomes]
rs6918786	0.88[ASN][1000 genomes]
rs6924236	0.83[ASN][1000 genomes]
rs6924834	0.88[ASN][1000 genomes]
rs6925039	0.88[ASN][1000 genomes]
rs7755746	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7766466	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766685	0.88[ASN][1000 genomes]
rs9349811	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9357903	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9357904	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357905	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357908	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9367680	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9370507	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9370508	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9370509	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9370510	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9370520	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9382616	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9396195	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9396200	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9396201	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9475661	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9689751	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56143600-56156200	Weak transcription	Fetal Lung	lung
2	chr6:56143800-56156200	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:56153600-56156200	Weak transcription	A549	lung
4	chr6:56154200-56155200	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:56154400-56154800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:56154400-56154800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:56154400-56155000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:56154400-56156000	Weak transcription	Fetal Heart	heart

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