Variant report
| Variant | rs7749325 |
|---|---|
| Chromosome Location | chr6:133468756-133468757 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOXA2 | chr6:133468444-133468965 | A549 | lung: | n/a | n/a |
| 2 | YY1 | chr6:133468641-133469387 | H1-hESC | embryonic stem cell: | n/a | chr6:133469223-133469235 |
| 3 | YY1 | chr6:133468681-133468868 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 4 | POLR2A | chr6:133468743-133468881 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 5 | FOXA2 | chr6:133468608-133468991 | A549 | lung: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MTCYBP4 | TF binding region |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs56024425 | 1.00[EUR][1000 genomes] |
| rs58728165 | 1.00[EUR][1000 genomes] |
| rs61143962 | 1.00[EUR][1000 genomes] |
| rs61610658 | 1.00[EUR][1000 genomes] |
| rs6900795 | 1.00[EUR][1000 genomes] |
| rs6928449 | 1.00[EUR][1000 genomes] |
| rs73776007 | 1.00[EUR][1000 genomes] |
| rs73776008 | 1.00[EUR][1000 genomes] |
| rs73776009 | 1.00[EUR][1000 genomes] |
| rs7741494 | 1.00[EUR][1000 genomes] |
| rs7742767 | 1.00[EUR][1000 genomes] |
| rs7751520 | 1.00[EUR][1000 genomes] |
| rs7775612 | 1.00[EUR][1000 genomes] |
| rs9483552 | 1.00[EUR][1000 genomes] |
| rs9483553 | 1.00[EUR][1000 genomes] |
| rs9483556 | 1.00[EUR][1000 genomes] |
| rs9493545 | 1.00[EUR][1000 genomes] |
| rs9493546 | 1.00[EUR][1000 genomes] |
| rs9493553 | 1.00[EUR][1000 genomes] |
| rs9493558 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428154 | chr6:133271975-133522803 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv519475 | chr6:133350936-133474673 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | esv2758080 | chr6:133444719-133627364 | Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | esv2759470 | chr6:133444719-133627364 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv886677 | chr6:133454738-133515602 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
