Variant report

Variant	rs7749549
Chromosome Location	chr6:150462006-150462007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11965674	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11965684	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11965744	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966337	1.00[AMR][1000 genomes]
rs11967151	1.00[AMR][1000 genomes]
rs17079341	0.85[AMR][1000 genomes]
rs17079342	1.00[AMR][1000 genomes]
rs17079351	1.00[AMR][1000 genomes]
rs56046004	0.85[AMR][1000 genomes]
rs73603955	1.00[AMR][1000 genomes]
rs73603958	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73605921	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759549	0.83[AMR][1000 genomes]
rs9479743	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150460800-150462200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:150461200-150463400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:150461400-150462200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:150461400-150462200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:150461400-150462200	Enhancers	NHEK	skin
6	chr6:150461800-150462200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:150461800-150463000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:150462000-150462200	Enhancers	HMEC	breast
9	chr6:150462000-150462400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
10	chr6:150462000-150462600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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