Variant report

Variant	rs774963
Chromosome Location	chr3:98848606-98848607
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1402272	0.89[AFR][1000 genomes]
rs1520689	0.94[AFR][1000 genomes]
rs1996692	0.94[AFR][1000 genomes]
rs2948596	0.96[AFR][1000 genomes]
rs2949159	0.90[AFR][1000 genomes]
rs2966546	0.90[AFR][1000 genomes]
rs2966549	0.96[AFR][1000 genomes]
rs704590	0.94[AFR][1000 genomes]
rs704591	0.94[AFR][1000 genomes]
rs774946	0.89[AFR][1000 genomes]
rs774962	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv877215	chr3:98804408-98884699	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv999649	chr3:98815244-98947271	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv536664	chr3:98815244-98947271	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1009629	chr3:98846458-98903887	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98844600-98851200	Enhancers	HSMM	muscle
2	chr3:98846800-98849000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:98846800-98849000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:98846800-98849000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:98846800-98849000	Enhancers	HMEC	breast
6	chr3:98846800-98849400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:98847000-98848800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:98847000-98848800	Enhancers	HUVEC	blood vessel
9	chr3:98847000-98849200	Enhancers	Osteobl	bone
10	chr3:98847000-98849400	Enhancers	NH-A	brain
11	chr3:98847000-98849400	Enhancers	NHDF-Ad	bronchial
12	chr3:98847200-98848800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:98847200-98848800	Enhancers	NHEK	skin
14	chr3:98847200-98849400	Enhancers	HSMMtube	muscle
15	chr3:98848000-98849000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:98848200-98849000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:98848400-98848800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr3:98848400-98849000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:98848400-98849000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:98848400-98849000	Enhancers	NHLF	lung
21	chr3:98848400-98850400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:98848400-98850800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:98848600-98849400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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