Variant report

Variant	rs7753174
Chromosome Location	chr6:166642850-166642851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6908843	0.90[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7741916	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029993	chr6:166621852-166695791	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538537	chr6:166621852-166695791	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7753174	C6orf70	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166642000-166643200	Flanking Active TSS	Dnd41	blood
2	chr6:166642000-166643800	Enhancers	Fetal Thymus	thymus
3	chr6:166642400-166643000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
4	chr6:166642400-166643000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:166642400-166643000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:166642400-166643200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:166642400-166643200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
8	chr6:166642600-166643000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr6:166642600-166643000	Enhancers	Primary T cells from cord blood	blood
10	chr6:166642600-166643000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:166642600-166643200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
12	chr6:166642600-166643200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:166642600-166643200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr6:166642600-166643200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:166642600-166643200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:166642600-166643200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:166642600-166643200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:166642600-166643200	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
19	chr6:166642600-166643400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
20	chr6:166642600-166643400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr6:166642600-166643400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
22	chr6:166642600-166643600	Enhancers	Primary B cells from cord blood	blood
23	chr6:166642600-166643800	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr6:166642800-166643000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
25	chr6:166642800-166643000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:166642800-166643000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr6:166642800-166643000	Bivalent Enhancer	Fetal Muscle Leg	muscle
28	chr6:166642800-166643000	Flanking Active TSS	Thymus	Thymus
29	chr6:166642800-166643200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:166642800-166643200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:166642800-166643200	Enhancers	Fetal Brain Male	brain
32	chr6:166642800-166643200	Enhancers	GM12878-XiMat	blood
33	chr6:166642800-166643400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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