Variant report
| Variant | rs7753205 |
|---|---|
| Chromosome Location | chr6:129021317-129021318 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs1508448 | 1.00[ASN][1000 genomes] |
| rs1949003 | 1.00[ASN][1000 genomes] |
| rs28513684 | 1.00[ASN][1000 genomes] |
| rs55986700 | 1.00[ASN][1000 genomes] |
| rs72975313 | 1.00[ASN][1000 genomes] |
| rs72975384 | 1.00[ASN][1000 genomes] |
| rs72975393 | 1.00[ASN][1000 genomes] |
| rs72975394 | 1.00[ASN][1000 genomes] |
| rs72975400 | 1.00[ASN][1000 genomes] |
| rs72977310 | 1.00[ASN][1000 genomes] |
| rs774281 | 1.00[ASN][1000 genomes] |
| rs7746855 | 1.00[ASN][1000 genomes] |
| rs7764078 | 1.00[ASN][1000 genomes] |
| rs7764948 | 1.00[ASN][1000 genomes] |
| rs9321130 | 1.00[ASN][1000 genomes] |
| rs9321133 | 1.00[ASN][1000 genomes] |
| rs9388665 | 1.00[ASN][1000 genomes] |
| rs9482917 | 1.00[ASN][1000 genomes] |
| rs9482918 | 1.00[ASN][1000 genomes] |
| rs9482919 | 1.00[ASN][1000 genomes] |
| rs9482920 | 1.00[ASN][1000 genomes] |
| rs9492057 | 1.00[ASN][1000 genomes] |
| rs9492059 | 1.00[ASN][1000 genomes] |
| rs9492060 | 1.00[ASN][1000 genomes] |
| rs9492061 | 1.00[ASN][1000 genomes] |
| rs9492062 | 1.00[ASN][1000 genomes] |
| rs9492063 | 1.00[ASN][1000 genomes] |
| rs9492064 | 1.00[ASN][1000 genomes] |
| rs9492065 | 1.00[ASN][1000 genomes] |
| rs9492066 | 1.00[ASN][1000 genomes] |
| rs9492067 | 1.00[ASN][1000 genomes] |
| rs9492068 | 1.00[ASN][1000 genomes] |
| rs9492069 | 1.00[ASN][1000 genomes] |
| rs9492070 | 1.00[ASN][1000 genomes] |
| rs9492071 | 1.00[ASN][1000 genomes] |
| rs9492074 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020071 | chr6:128579774-129048919 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv538441 | chr6:128579774-129048919 | Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv830801 | chr6:128878436-129064667 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv1030330 | chr6:129008538-129095108 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:129018600-129045800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
