Variant report

Variant	rs7754126
Chromosome Location	chr6:150921729-150921730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:150920852-150922155	GM19193	blood:	n/a	n/a
2	RAD21	chr6:150921490-150922285	ECC-1	luminal epithelium:	n/a	chr6:150922067-150922081
3	ZBTB7A	chr6:150920781-150922160	ECC-1	luminal epithelium:	n/a	chr6:150921458-150921467 chr6:150921865-150921872
4	ZBTB7A	chr6:150921038-150922033	ECC-1	luminal epithelium:	n/a	chr6:150921458-150921467 chr6:150921865-150921872
5	CTCF	chr6:150921676-150921775	Pancreas_OC	pancreas:	n/a	n/a
6	CTCF	chr6:150921700-150921850	GM12865	blood:	n/a	n/a
7	ELF1	chr6:150921528-150922173	GM12878	blood:	n/a	chr6:150921902-150921911
8	MAX	chr6:150921688-150922105	GM12878	blood:	n/a	n/a
9	EP300	chr6:150921625-150922046	GM12878	blood:	n/a	chr6:150921831-150921840 chr6:150921670-150921679
10	CTCF	chr6:150921594-150921832	Spleen_OC	spleen:	n/a	n/a
11	CTCF	chr6:150921605-150921820	GM12892	blood:	n/a	n/a
12	MAX	chr6:150921530-150922302	ECC-1	luminal epithelium:	n/a	n/a
13	TCF7L2	chr6:150921620-150922224	HCT-116	colon:	n/a	n/a
14	CTCF	chr6:150921610-150921814	GM19240	blood:	n/a	n/a
15	CTCF	chr6:150921691-150921773	Lung_OC	lung:	n/a	n/a
16	TBL1XR1	chr6:150921697-150922213	GM12878	blood:	n/a	n/a
17	POLR2A	chr6:150920889-150922127	Raji	blood:	n/a	n/a
18	RAD21	chr6:150921482-150922333	H1-hESC	embryonic stem cell:	n/a	chr6:150922067-150922081
19	SP1	chr6:150921556-150922242	GM12878	blood:	n/a	chr6:150921866-150921873 chr6:150921740-150921749 chr6:150921739-150921751 chr6:150921560-150921569
20	CTCF	chr6:150921635-150921818	GM12891	blood:	n/a	n/a
21	ATF2	chr6:150921705-150922322	GM12878	blood:	n/a	n/a
22	ZEB1	chr6:150921638-150922335	GM12878	blood:	n/a	n/a
23	MAX	chr6:150921689-150922226	H1-hESC	embryonic stem cell:	n/a	n/a
24	SMC3	chr6:150921720-150922273	GM12878	blood:	n/a	n/a
25	TCF3	chr6:150921666-150921810	GM12878	blood:	n/a	chr6:150921787-150921802
26	CTCF	chr6:150921630-150921794	GM10248	blood:	n/a	n/a
27	RAD21	chr6:150921718-150922231	H1-hESC	embryonic stem cell:	n/a	chr6:150922067-150922081
28	BACH1	chr6:150921699-150921830	H1-hESC	embryonic stem cell:	n/a	n/a
29	ZNF143	chr6:150920875-150922230	GM12878	blood:	n/a	chr6:150921831-150921841 chr6:150921651-150921669 chr6:150921077-150921087 chr6:150921834-150921852 chr6:150921540-150921549
30	RUNX3	chr6:150921583-150922232	GM12878	blood:	n/a	n/a
31	POU2F2	chr6:150921434-150922257	GM12878	blood:	n/a	chr6:150921831-150921843
32	EP300	chr6:150921540-150922083	GM12878	blood:	n/a	chr6:150921831-150921840 chr6:150921670-150921679
33	MAX	chr6:150921663-150922339	ECC-1	luminal epithelium:	n/a	n/a
34	NRF1	chr6:150921704-150921771	GM12878	blood:	n/a	n/a
35	REST	chr6:150920737-150922500	H1-neurons	neurons:	n/a	chr6:150922073-150922086 chr6:150921613-150921626
36	POLR2A	chr6:150921708-150922014	H1-hESC	embryonic stem cell:	n/a	n/a
37	CTCF	chr6:150921675-150921744	GM13977	blood:	n/a	n/a
38	CTCF	chr6:150921640-150921790	NHDF-neo	bronchial:	n/a	n/a
39	TAF1	chr6:150921407-150922262	H1-neurons	neurons:	n/a	n/a
40	MXI1	chr6:150921651-150922186	GM12878	blood:	n/a	n/a
41	POLR2A	chr6:150921457-150922225	HCT-116	colon:	n/a	n/a
42	POLR2A	chr6:150921549-150922075	HUVEC	blood vessel:	n/a	n/a
43	MTA3	chr6:150921501-150922202	GM12878	blood:	n/a	n/a
44	TBP	chr6:150921526-150922165	H1-hESC	embryonic stem cell:	n/a	n/a
45	RUNX3	chr6:150921569-150922331	GM12878	blood:	n/a	n/a
46	MAZ	chr6:150921485-150922165	GM12878	blood:	n/a	n/a
47	RAD21	chr6:150921390-150922394	HCT-116	colon:	n/a	chr6:150922067-150922081 chr6:150921429-150921442
48	POLR2A	chr6:150921408-150922054	GM12878	blood:	n/a	n/a
49	EBF1	chr6:150921722-150921815	GM12878	blood:	n/a	n/a
50	CTCF	chr6:150921640-150921790	HMEC	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000232891	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3050	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3415576	chr6:150920109-150923107	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150920200-150922400	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr6:150920200-150922400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:150920200-150922400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:150920200-150922400	Active TSS	Fetal Kidney	kidney
5	chr6:150920200-150922400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:150920200-150922600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:150920400-150921800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
8	chr6:150920400-150921800	Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr6:150920400-150921800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
10	chr6:150920400-150922000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:150920400-150922000	Active TSS	Primary T helper naive cells from peripheral blood	blood
12	chr6:150920400-150922000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:150920400-150922000	Active TSS	Liver	Liver
14	chr6:150920400-150922000	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr6:150920400-150922200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:150920400-150922200	Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr6:150920400-150922200	Active TSS	Duodenum Mucosa	Duodenum
18	chr6:150920400-150922400	Active TSS	Brain Angular Gyrus	brain
19	chr6:150920400-150922400	Active TSS	Rectal Smooth Muscle	rectum
20	chr6:150920400-150922400	Active TSS	Small Intestine	intestine
21	chr6:150920400-150922400	Active TSS	Stomach Mucosa	stomach
22	chr6:150920400-150922600	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr6:150920400-150923000	Active TSS	Right Atrium	heart
24	chr6:150920400-150923200	Active TSS	Thymus	Thymus
25	chr6:150920600-150921800	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr6:150920600-150921800	Weak transcription	Fetal Brain Male	brain
27	chr6:150920600-150921800	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
28	chr6:150920600-150921800	Active TSS	Placenta	Placenta
29	chr6:150920600-150921800	Active TSS	GM12878-XiMat	blood
30	chr6:150920600-150922000	Active TSS	Primary B cells from peripheral blood	blood
31	chr6:150920600-150922000	Active TSS	Primary T cells from cord blood	blood
32	chr6:150920600-150922000	Active TSS	Brain Cingulate Gyrus	brain
33	chr6:150920600-150922200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:150920600-150922200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:150920600-150922200	Active TSS	Brain Substantia Nigra	brain
36	chr6:150920600-150922200	Active TSS	Ovary	ovary
37	chr6:150920600-150922200	Active TSS	NHEK	skin
38	chr6:150920600-150922400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
39	chr6:150920600-150922400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
40	chr6:150920600-150922400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
41	chr6:150920600-150922400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
42	chr6:150920600-150922400	Active TSS	Cortex derived primary cultured neurospheres	brain
43	chr6:150920600-150922400	Active TSS	Brain Anterior Caudate	brain
44	chr6:150920600-150922400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:150920600-150922400	Active TSS	Colonic Mucosa	Colon
46	chr6:150920600-150922400	Active TSS	Fetal Thymus	thymus
47	chr6:150920600-150922600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
48	chr6:150920600-150922600	Active TSS	Right Ventricle	heart
49	chr6:150920800-150921800	Active TSS	Primary T helper cells fromperipheralblood	blood
50	chr6:150920800-150921800	Active TSS	Fetal Intestine Large	intestine

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