Variant report

Variant	rs7754146
Chromosome Location	chr6:150468523-150468524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17079360	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1886360	0.93[ASN][1000 genomes]
rs35455053	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4869836	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4870307	0.93[ASN][1000 genomes]
rs73605918	0.93[ASN][1000 genomes]
rs73605924	0.93[ASN][1000 genomes]
rs9479750	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150465600-150471600	Weak transcription	Psoas Muscle	Psoas
2	chr6:150465600-150471800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:150465800-150468800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:150467000-150470200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:150467000-150470200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:150467200-150469600	Enhancers	HMEC	breast
7	chr6:150467400-150469000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:150467600-150468800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:150467800-150468600	Enhancers	Left Ventricle	heart
10	chr6:150467800-150468800	Enhancers	Fetal Heart	heart
11	chr6:150467800-150469400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:150467800-150472600	Enhancers	NHEK	skin
13	chr6:150467800-150473400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:150467800-150473400	Weak transcription	Right Atrium	heart
15	chr6:150468000-150469400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:150468000-150470800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:150468000-150471200	Genic enhancers	K562	blood
18	chr6:150468200-150469400	Weak transcription	Placenta	Placenta
19	chr6:150468200-150469400	Weak transcription	Right Ventricle	heart
20	chr6:150468200-150472800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:150468400-150470000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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