Variant report

Variant	rs7754376
Chromosome Location	chr6:101982531-101982532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs7747072	0.94[MEX][hapmap]
rs9285546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9322587	0.87[YRI][hapmap]
rs9322598	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9373614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9377282	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9386283	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9386284	0.88[CEU][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs9390754	0.83[MEX][hapmap]
rs9390755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390760	0.88[ASN][1000 genomes]
rs9404115	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap]
rs9404116	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9404117	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9404119	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101978800-101982600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:101980000-101983800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:101981800-101982600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:101982000-101982800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:101982000-101983000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:101982400-101982600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr6:101982400-101982800	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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