Variant report

Variant	rs7755565
Chromosome Location	chr6:150463376-150463377
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr6:150463351-150463575	GM12878	blood:	n/a	n/a
2	PAX5	chr6:150463328-150463599	GM12878	blood:	n/a	n/a
3	MAX	chr6:150463355-150464742	ECC-1	luminal epithelium:	n/a	chr6:150463947-150463956
4	KAP1	chr6:150463034-150463533	HEK293	kidney:	n/a	chr6:150463357-150463365
5	ZNF263	chr6:150463239-150466129	HEK293-T-REx	kidney:	n/a	chr6:150464144-150464153

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150462370..150464017-chr6:150474588..150477355,2	K562	blood:

Variant related genes	Relation type
PPP1R14C	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1107836	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2297672	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57900356	0.82[EUR][1000 genomes]
rs7764312	0.81[EUR][1000 genomes]
rs7769185	0.81[EUR][1000 genomes]
rs9371775	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3365555	chr6:150463284-150466132	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150461200-150463400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:150462200-150463600	Weak transcription	Right Atrium	heart
3	chr6:150463000-150463400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
4	chr6:150463000-150463400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:150463000-150463400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:150463000-150463400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:150463000-150463400	Bivalent Enhancer	Fetal Kidney	kidney
8	chr6:150463000-150463400	Bivalent Enhancer	K562	blood
9	chr6:150463000-150463600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:150463000-150463600	Bivalent Enhancer	Colonic Mucosa	Colon
11	chr6:150463000-150463600	Bivalent Enhancer	Fetal Thymus	thymus
12	chr6:150463000-150463800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:150463000-150463800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
14	chr6:150463000-150465400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:150463200-150463400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:150463200-150463400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:150463200-150463400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:150463200-150463400	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:150463200-150463400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:150463200-150463400	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr6:150463200-150463400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:150463200-150463400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:150463200-150463400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:150463200-150463400	Bivalent Enhancer	Brain Angular Gyrus	brain
25	chr6:150463200-150463400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
26	chr6:150463200-150463400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:150463200-150463400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr6:150463200-150463400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
29	chr6:150463200-150463400	Bivalent Enhancer	Fetal Lung	lung
30	chr6:150463200-150463400	Bivalent Enhancer	Fetal Muscle Leg	muscle
31	chr6:150463200-150463400	Enhancers	Left Ventricle	heart
32	chr6:150463200-150463400	Enhancers	Right Ventricle	heart
33	chr6:150463200-150463400	Flanking Bivalent TSS/Enh	HSMM	muscle
34	chr6:150463200-150463400	Flanking Bivalent TSS/Enh	Osteobl	bone
35	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
37	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
38	chr6:150463200-150463600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr6:150463200-150463600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:150463200-150463600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr6:150463200-150463600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:150463200-150463600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
44	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
45	chr6:150463200-150463600	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
47	chr6:150463200-150463600	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
48	chr6:150463200-150463600	Flanking Active TSS	Fetal Brain Male	brain
49	chr6:150463200-150463600	Flanking Active TSS	Fetal Heart	heart
50	chr6:150463200-150463600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links