Variant report

Variant	rs77555937
Chromosome Location	chr19:35950817-35950818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:35940497..35942459-chr19:35950134..35952077,2	MCF-7	breast:
2	chr19:35950578..35953125-chr19:35957204..35959006,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126262	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
5	nsv833811	chr19:35850257-36029535	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv1057692	chr19:35949892-35984103	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	nsv543994	chr19:35949892-35984103	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35941600-35970200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:35943000-35952400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr19:35943200-35951800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr19:35946600-35955200	Enhancers	Primary B cells from peripheral blood	blood
5	chr19:35946800-35951800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr19:35947200-35952000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr19:35948000-35952400	Enhancers	Liver	Liver
8	chr19:35948200-35955000	Enhancers	Primary hematopoietic stem cells	blood
9	chr19:35948200-35955000	Enhancers	Fetal Thymus	thymus
10	chr19:35948200-35955600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr19:35948600-35951000	Enhancers	Fetal Intestine Large	intestine
12	chr19:35948600-35951200	Enhancers	Fetal Intestine Small	intestine
13	chr19:35948600-35952400	Enhancers	Fetal Stomach	stomach
14	chr19:35948600-35952600	Enhancers	Fetal Lung	lung
15	chr19:35948600-35953000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr19:35948600-35955000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr19:35948800-35951000	Enhancers	Stomach Mucosa	stomach
18	chr19:35948800-35951000	Flanking Active TSS	HepG2	liver
19	chr19:35948800-35951200	Enhancers	Pancreas	Pancrea
20	chr19:35948800-35954600	Enhancers	Placenta	Placenta
21	chr19:35948800-35955000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr19:35949400-35951000	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr19:35949400-35951200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr19:35949400-35952000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr19:35949600-35951000	Enhancers	Fetal Kidney	kidney
26	chr19:35949600-35951200	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr19:35949600-35952200	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr19:35949600-35952600	Enhancers	Fetal Muscle Leg	muscle
29	chr19:35949600-35953800	Enhancers	Spleen	Spleen
30	chr19:35949600-35955800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr19:35949800-35951000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr19:35949800-35951000	Enhancers	Brain Cingulate Gyrus	brain
33	chr19:35949800-35951000	Enhancers	Ovary	ovary
34	chr19:35949800-35951200	Enhancers	Lung	lung
35	chr19:35949800-35951200	Enhancers	Right Atrium	heart
36	chr19:35949800-35951800	Weak transcription	Primary T cells from cord blood	blood
37	chr19:35949800-35952200	Enhancers	Right Ventricle	heart
38	chr19:35949800-35952600	Enhancers	Left Ventricle	heart
39	chr19:35949800-35955200	Enhancers	Fetal Muscle Trunk	muscle
40	chr19:35950000-35951000	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr19:35950000-35951000	Enhancers	Brain Angular Gyrus	brain
42	chr19:35950000-35951000	Enhancers	Brain Hippocampus Middle	brain
43	chr19:35950000-35951000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr19:35950000-35953200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr19:35950200-35951000	Enhancers	Esophagus	oesophagus
46	chr19:35950200-35953200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr19:35950400-35951000	Enhancers	Colon Smooth Muscle	Colon
48	chr19:35950400-35951400	Weak transcription	Colonic Mucosa	Colon
49	chr19:35950400-35953000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr19:35950400-35953200	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links