Variant report

Variant	rs775640
Chromosome Location	chr12:67728993-67728994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1066392	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1066397	1.00[AMR][1000 genomes]
rs1082703	1.00[AMR][1000 genomes]
rs1082704	1.00[AMR][1000 genomes]
rs1082705	1.00[AMR][1000 genomes]
rs1082706	1.00[AMR][1000 genomes]
rs10878627	1.00[CHB][hapmap]
rs1143757	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1143946	1.00[AMR][1000 genomes]
rs1143955	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1152891	1.00[AMR][1000 genomes]
rs1152899	1.00[AMR][1000 genomes]
rs1152903	1.00[AMR][1000 genomes]
rs1186260	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1252363	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1252409	1.00[AMR][1000 genomes]
rs1252411	1.00[AMR][1000 genomes]
rs1252420	1.00[AMR][1000 genomes]
rs1252433	1.00[YRI][hapmap]
rs1392588	1.00[AMR][1000 genomes]
rs1392589	1.00[AMR][1000 genomes]
rs1658782	1.00[AMR][1000 genomes]
rs1697242	1.00[ASW][hapmap]
rs1697249	1.00[AMR][1000 genomes]
rs1732535	1.00[ASW][hapmap]
rs1732541	1.00[AMR][1000 genomes]
rs2289242	1.00[CHB][hapmap]
rs55873224	1.00[AMR][1000 genomes]
rs710621	1.00[AMR][1000 genomes]
rs710799	1.00[AMR][1000 genomes]
rs74099404	1.00[AMR][1000 genomes]
rs74099424	1.00[AMR][1000 genomes]
rs74099464	1.00[AMR][1000 genomes]
rs775311	1.00[AMR][1000 genomes]
rs775625	1.00[AMR][1000 genomes]
rs775627	1.00[AMR][1000 genomes]
rs775642	1.00[AMR][1000 genomes]
rs775643	1.00[AMR][1000 genomes]
rs775649	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs775664	1.00[AMR][1000 genomes]
rs7970512	1.00[ASW][hapmap]
rs812882	1.00[AMR][1000 genomes]
rs812883	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv756	chr12:67703587-67744743	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	esv3347247	chr12:67728199-67733930	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
5	esv3497208	chr12:67728242-67733910	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
6	esv3497219	chr12:67728242-67733910	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
7	esv16869	chr12:67728435-67733753	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67716600-67732000	Weak transcription	HMEC	breast
2	chr12:67716600-67748000	Weak transcription	HSMM	muscle
3	chr12:67717400-67731400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:67728400-67748000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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