Variant report

Variant	rs7756654
Chromosome Location	chr6:53591120-53591121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:53587433..53591147-chr6:53595586..53599292,4	MCF-7	breast:
2	chr6:53357555..53358402-chr6:53590290..53591260,4	K562	blood:
3	chr6:53590810..53593190-chr6:53597036..53600341,4	K562	blood:
4	chr6:53358288..53358988-chr6:53590034..53591204,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs3000998	0.82[TSI][hapmap]
rs35709775	0.89[EUR][1000 genomes]
rs4269375	0.82[TSI][hapmap]
rs4421195	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4493745	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4518484	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4715425	0.82[TSI][hapmap]
rs7738167	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7744954	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7756771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763012	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767443	0.82[TSI][hapmap]
rs9382239	0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2421836	chr6:53581398-53591120	Bivalent Enhancer Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53588800-53594600	Enhancers	Placenta	Placenta
2	chr6:53589000-53592600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:53589400-53594400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:53589600-53591200	Enhancers	Dnd41	blood
5	chr6:53589600-53593200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:53589600-53593600	Enhancers	HepG2	liver
7	chr6:53589800-53594800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:53589800-53595000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:53589800-53595000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:53589800-53599400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:53590000-53593200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:53590000-53593200	Weak transcription	Fetal Intestine Large	intestine
13	chr6:53590000-53593200	Weak transcription	Fetal Intestine Small	intestine
14	chr6:53590000-53595000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:53590200-53595000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:53590600-53591200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:53590600-53591200	Enhancers	Brain Cingulate Gyrus	brain
18	chr6:53590600-53591200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:53590800-53591200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr6:53590800-53591200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:53590800-53591200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:53590800-53591200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
23	chr6:53590800-53591200	Enhancers	Liver	Liver
24	chr6:53590800-53591200	Enhancers	Brain Angular Gyrus	brain
25	chr6:53590800-53591200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr6:53590800-53591200	Enhancers	Colon Smooth Muscle	Colon
27	chr6:53590800-53591200	Enhancers	Left Ventricle	heart
28	chr6:53590800-53591200	Enhancers	Pancreas	Pancrea
29	chr6:53590800-53591200	Enhancers	A549	lung
30	chr6:53590800-53591200	Enhancers	HUVEC	blood vessel
31	chr6:53590800-53593200	Weak transcription	Fetal Kidney	kidney
32	chr6:53591000-53591200	Enhancers	Brain Anterior Caudate	brain
33	chr6:53591000-53591600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:53591000-53592200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:53591000-53592600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr6:53591000-53593200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:53591000-53593200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:53591000-53593200	Weak transcription	Adipose Nuclei	Adipose
39	chr6:53591000-53593200	Weak transcription	Brain Hippocampus Middle	brain
40	chr6:53591000-53596800	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr6:53591000-53599000	Weak transcription	Stomach Mucosa	stomach

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