Variant report

Variant	rs7756667
Chromosome Location	chr6:133282020-133282021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:133278011..133280179-chr6:133280238..133282944,2	MCF-7	breast:
2	chr6:133256408..133258237-chr6:133281359..133282917,2	MCF-7	breast:
3	chr6:133135326..133136899-chr6:133281433..133284001,2	K562	blood:

Variant related genes	Relation type
ENSG00000112306	Chromatin interaction
ENSG00000206754	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72556085	0.82[ASN][1000 genomes]
rs72556086	0.82[ASN][1000 genomes]
rs72556087	0.82[ASN][1000 genomes]
rs72556089	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133280200-133283200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr6:133280400-133282400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:133280600-133283000	Enhancers	Fetal Lung	lung
4	chr6:133280600-133283200	Enhancers	HepG2	liver
5	chr6:133280600-133284400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:133280800-133282200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:133280800-133282400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:133280800-133283000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:133280800-133286200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:133281200-133283000	Enhancers	Fetal Heart	heart
11	chr6:133281200-133285000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:133281600-133282600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
13	chr6:133281600-133285400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:133281800-133282200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:133281800-133282600	Enhancers	HMEC	breast
16	chr6:133281800-133282800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:133281800-133282800	Enhancers	NH-A	brain
18	chr6:133281800-133283000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:133281800-133283000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:133281800-133283000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:133281800-133283200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:133282000-133282600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:133282000-133282600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:133282000-133282600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr6:133282000-133282600	Enhancers	HSMMtube	muscle
26	chr6:133282000-133282800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr6:133282000-133282800	Enhancers	HSMM	muscle
28	chr6:133282000-133282800	Enhancers	NHLF	lung
29	chr6:133282000-133282800	Enhancers	Osteobl	bone
30	chr6:133282000-133283000	Enhancers	Fetal Muscle Leg	muscle
31	chr6:133282000-133283000	Enhancers	Left Ventricle	heart
32	chr6:133282000-133283000	Enhancers	Psoas Muscle	Psoas
33	chr6:133282000-133283200	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links