Variant report

Variant	rs7757960
Chromosome Location	chr6:13048734-13048735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10948405	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751831	1.00[CHB][hapmap]
rs11753838	1.00[CHB][hapmap]
rs11755240	1.00[CHB][hapmap]
rs11757001	1.00[CHB][hapmap]
rs13215098	0.82[CHB][hapmap]
rs17375084	1.00[CHB][hapmap]
rs1937774	1.00[CHB][hapmap]
rs4130157	0.82[CHB][hapmap]
rs4273676	1.00[CHB][hapmap]
rs4329096	1.00[CHB][hapmap]
rs4389765	0.82[CHB][hapmap]
rs4537139	1.00[CHB][hapmap]
rs4715077	0.82[CHB][hapmap]
rs56950799	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458624	0.82[CHB][hapmap]
rs6934799	1.00[TSI][hapmap]
rs6935948	1.00[TSI][hapmap]
rs73366282	0.87[EUR][1000 genomes]
rs73368106	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7451414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743585	0.83[ASW][hapmap];0.80[LWK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs7750023	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs7750099	0.94[ASW][hapmap];0.84[LWK][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs7757631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762786	1.00[CHB][hapmap]
rs7775103	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs7775760	0.82[CHB][hapmap]
rs9473318	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13029800-13056400	Weak transcription	Pancreas	Pancrea
2	chr6:13030000-13056400	Weak transcription	Brain Germinal Matrix	brain
3	chr6:13038200-13053400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:13039400-13054800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:13039400-13071600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:13040000-13058000	Weak transcription	Fetal Brain Male	brain
7	chr6:13045000-13053000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:13045200-13050000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:13045200-13053400	Weak transcription	Brain Anterior Caudate	brain
10	chr6:13046400-13053000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:13046600-13052200	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:13046800-13050000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:13047800-13048800	Enhancers	Left Ventricle	heart
14	chr6:13047800-13048800	Enhancers	NHDF-Ad	bronchial
15	chr6:13047800-13049000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:13048000-13048800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:13048000-13048800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:13048000-13048800	Enhancers	NHEK	skin
19	chr6:13048200-13048800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:13048200-13048800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:13048400-13048800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:13048400-13049000	Enhancers	Aorta	Aorta
23	chr6:13048400-13049000	Enhancers	Esophagus	oesophagus
24	chr6:13048400-13049200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:13048400-13063400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:13048600-13048800	Enhancers	Right Ventricle	heart
27	chr6:13048600-13050200	Weak transcription	Fetal Heart	heart
28	chr6:13048600-13053600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:13048600-13058000	Weak transcription	Lung	lung

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