Variant report

Variant	rs7758138
Chromosome Location	chr6:55862244-55862245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55845445..55846395-chr6:55861990..55862829,3	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1002249	0.83[ASN][1000 genomes]
rs1002250	1.00[ASN][1000 genomes]
rs1005783	0.90[ASN][1000 genomes]
rs10456725	0.90[ASN][1000 genomes]
rs10948960	1.00[ASN][1000 genomes]
rs10948961	1.00[ASN][1000 genomes]
rs10948964	0.83[ASN][1000 genomes]
rs10948965	1.00[ASN][1000 genomes]
rs10948966	1.00[ASN][1000 genomes]
rs10948967	1.00[ASN][1000 genomes]
rs10948968	1.00[ASN][1000 genomes]
rs12190342	1.00[ASN][1000 genomes]
rs12193200	0.90[ASN][1000 genomes]
rs12198766	1.00[ASN][1000 genomes]
rs12201907	0.90[ASN][1000 genomes]
rs12204670	1.00[ASN][1000 genomes]
rs12204682	1.00[ASN][1000 genomes]
rs12205967	1.00[ASN][1000 genomes]
rs12208353	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208960	0.90[ASN][1000 genomes]
rs12209568	1.00[ASN][1000 genomes]
rs12211675	1.00[CHB][hapmap]
rs12212033	1.00[ASN][1000 genomes]
rs12215085	1.00[ASN][1000 genomes]
rs16869623	1.00[ASN][1000 genomes]
rs16887630	1.00[CHB][hapmap]
rs17677530	1.00[CHB][hapmap]
rs2143518	1.00[ASN][1000 genomes]
rs3950156	1.00[ASN][1000 genomes]
rs60746236	0.90[ASN][1000 genomes]
rs62406073	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62406117	0.90[ASN][1000 genomes]
rs62406122	0.83[EUR][1000 genomes]
rs714069	1.00[ASN][1000 genomes]
rs7739760	0.90[ASN][1000 genomes]
rs7755390	0.90[ASN][1000 genomes]
rs7773385	0.90[ASN][1000 genomes]
rs9296819	1.00[ASN][1000 genomes]
rs9296820	0.90[ASN][1000 genomes]
rs9296821	0.90[ASN][1000 genomes]
rs9296822	0.83[EUR][1000 genomes]
rs9464315	1.00[ASN][1000 genomes]
rs9464327	1.00[ASN][1000 genomes]
rs9475487	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9475495	0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9475497	1.00[ASN][1000 genomes]
rs9475498	1.00[ASN][1000 genomes]
rs9475510	1.00[ASN][1000 genomes]
rs9475512	1.00[ASN][1000 genomes]
rs9475513	1.00[ASN][1000 genomes]
rs9475514	1.00[ASN][1000 genomes]
rs9475515	1.00[ASN][1000 genomes]
rs9475516	1.00[ASN][1000 genomes]
rs9475517	1.00[ASN][1000 genomes]
rs9475519	1.00[ASN][1000 genomes]
rs9475530	0.90[ASN][1000 genomes]
rs9475536	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9475545	0.83[EUR][1000 genomes]
rs980917	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv603176	chr6:55826137-55867789	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3498415	chr6:55830704-55911231	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3498412	chr6:55830968-55909153	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3498414	chr6:55831055-55909122	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2584235	chr6:55831055-55910117	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3498413	chr6:55831100-55909183	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3498416	chr6:55831124-55909074	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1031430	chr6:55834480-55906937	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv526771	chr6:55846527-55894135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55862000-55862600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:55862000-55862800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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