Variant report

Variant	rs7759004
Chromosome Location	chr6:132930324-132930325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1081074	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28431469	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3813353	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs61745666	0.93[ASN][1000 genomes]
rs7738600	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741930	0.96[ASN][1000 genomes]
rs7763027	0.93[ASN][1000 genomes]
rs7764168	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs7769453	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9483484	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs9493400	0.85[ASN][1000 genomes]
rs9493401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9493402	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7759004	TRAP1	trans	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132926200-132933600	Weak transcription	Stomach Mucosa	stomach
2	chr6:132926600-132931800	Weak transcription	Small Intestine	intestine
3	chr6:132928000-132935200	Enhancers	Fetal Intestine Small	intestine
4	chr6:132928200-132932200	Enhancers	Fetal Intestine Large	intestine
5	chr6:132929000-132933600	Weak transcription	HepG2	liver
6	chr6:132929400-132931600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:132929600-132930400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:132929600-132930400	Enhancers	Brain Substantia Nigra	brain
9	chr6:132929600-132932000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:132929800-132930400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:132929800-132930400	Enhancers	Duodenum Mucosa	Duodenum
12	chr6:132929800-132931800	Weak transcription	Pancreas	Pancrea
13	chr6:132930000-132931800	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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