Variant report

Variant	rs7759549
Chromosome Location	chr6:150466617-150466618
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150465090..150467055-chr6:150662955..150664731,2	K562	blood:
2	chr6:150460907..150462974-chr6:150465892..150468393,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11965674	0.83[AMR][1000 genomes]
rs11965684	0.83[AMR][1000 genomes]
rs11965744	0.83[AMR][1000 genomes]
rs11966337	0.83[AMR][1000 genomes]
rs11967151	0.83[AMR][1000 genomes]
rs17079342	0.83[AMR][1000 genomes]
rs17079351	0.83[AMR][1000 genomes]
rs73603955	0.83[AMR][1000 genomes]
rs73603958	0.83[AMR][1000 genomes]
rs73605921	0.83[AMR][1000 genomes]
rs7749549	0.83[AMR][1000 genomes]
rs9479743	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150463600-150467200	Active TSS	Right Atrium	heart
2	chr6:150464600-150466800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
3	chr6:150465000-150467000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr6:150465000-150467200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:150465000-150467400	Flanking Active TSS	K562	blood
6	chr6:150465400-150467000	Bivalent/Poised TSS	Fetal Heart	heart
7	chr6:150465600-150467600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:150465600-150471600	Weak transcription	Psoas Muscle	Psoas
9	chr6:150465600-150471800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:150465800-150467000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:150465800-150467400	Weak transcription	Placenta	Placenta
12	chr6:150465800-150468800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr6:150466000-150466800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:150466000-150467800	Weak transcription	Right Ventricle	heart
15	chr6:150466200-150467000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
16	chr6:150466200-150467600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:150466400-150466800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:150466400-150466800	Bivalent Enhancer	Fetal Brain Male	brain
19	chr6:150466400-150467000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:150466400-150467000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
21	chr6:150466400-150467200	Flanking Active TSS	HMEC	breast
22	chr6:150466400-150467200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr6:150466400-150467400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:150466400-150467400	Flanking Active TSS	NHEK	skin
25	chr6:150466600-150466800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:150466600-150466800	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:150466600-150466800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
28	chr6:150466600-150466800	Bivalent Enhancer	Primary B cells from cord blood	blood
29	chr6:150466600-150466800	Flanking Active TSS	Fetal Brain Female	brain
30	chr6:150466600-150466800	Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr6:150466600-150467000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:150466600-150467200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr6:150466600-150467400	Enhancers	Placenta Amnion	Placenta Amnion
34	chr6:150466600-150467600	Bivalent Enhancer	GM12878-XiMat	blood
35	chr6:150466600-150467800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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