Variant report

Variant	rs7760016
Chromosome Location	chr6:12908077-12908078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1014342	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12530250	0.88[EUR][1000 genomes]
rs13197912	0.88[EUR][1000 genomes]
rs1332844	1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs1953088	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2327620	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876302	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2876303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4714955	0.88[EUR][1000 genomes]
rs4714990	0.87[AMR][1000 genomes]
rs62389955	0.88[EUR][1000 genomes]
rs6458545	0.81[AMR][1000 genomes]
rs6911226	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6915761	0.86[ASN][1000 genomes]
rs6915983	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6925904	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7454157	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750679	1.00[CHB][hapmap];0.98[EUR][1000 genomes]
rs7751826	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7760527	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296512	1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs9369640	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9369650	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9369652	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9381494	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9463278	0.80[ASN][1000 genomes]
rs9472965	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12885600-12908800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:12894000-12908800	Weak transcription	Fetal Brain Female	brain
3	chr6:12896600-12911000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:12901400-12908800	Weak transcription	Brain Germinal Matrix	brain
5	chr6:12906000-12908800	Weak transcription	Fetal Heart	heart
6	chr6:12906000-12912000	Weak transcription	Aorta	Aorta
7	chr6:12907000-12911200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:12907800-12911400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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