Variant report

Variant	rs7760570
Chromosome Location	chr6:133711721-133711722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10484669	0.93[CEU][hapmap]
rs11968392	0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1336520	0.81[CEU][hapmap]
rs159421	0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs17062425	0.80[YRI][hapmap]
rs17062451	0.80[YRI][hapmap]
rs17062457	0.80[YRI][hapmap]
rs1998836	0.93[CEU][hapmap]
rs2095602	0.93[CEU][hapmap]
rs2095603	0.93[CEU][hapmap]
rs2223435	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777804	0.93[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs3777820	0.82[AFR][1000 genomes]
rs714178	0.93[CEU][hapmap]
rs742300	0.93[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7760570	EPB41L2	cis	parietal	SCAN
rs7760570	TAAR9	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133703800-133713200	Weak transcription	HSMMtube	muscle
3	chr6:133707600-133714400	Weak transcription	Hela-S3	cervix
4	chr6:133709200-133712800	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:133709200-133713600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:133709800-133712600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:133709800-133719800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:133710200-133712600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:133710400-133712800	Weak transcription	Brain Substantia Nigra	brain
10	chr6:133710600-133712000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:133710600-133712400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:133710600-133716400	Weak transcription	Psoas Muscle	Psoas
13	chr6:133711200-133717400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:133711600-133712200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:133711600-133713000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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