Variant report

Variant	rs7761720
Chromosome Location	chr6:64093117-64093118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64060326..64062411-chr6:64092797..64095365,2	K562	blood:
2	chr6:64091757..64094702-chr6:64282353..64283883,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112245	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1010057	0.90[EUR][1000 genomes]
rs1320419	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1404779	0.90[EUR][1000 genomes]
rs1464865	0.90[EUR][1000 genomes]
rs1464866	0.85[EUR][1000 genomes]
rs1525354	0.90[EUR][1000 genomes]
rs1525355	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1525357	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1619321	0.90[EUR][1000 genomes]
rs1621804	0.90[EUR][1000 genomes]
rs1625205	0.90[EUR][1000 genomes]
rs1628449	0.85[EUR][1000 genomes]
rs1711897	0.90[EUR][1000 genomes]
rs1711898	0.90[EUR][1000 genomes]
rs1711899	0.84[EUR][1000 genomes]
rs1711901	0.90[EUR][1000 genomes]
rs1711902	0.90[EUR][1000 genomes]
rs1711903	0.84[EUR][1000 genomes]
rs1711904	0.90[EUR][1000 genomes]
rs1711906	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1711912	0.90[EUR][1000 genomes]
rs1711913	0.90[EUR][1000 genomes]
rs1711914	0.90[EUR][1000 genomes]
rs1711915	0.90[EUR][1000 genomes]
rs1711918	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1711927	0.90[EUR][1000 genomes]
rs1711928	0.90[EUR][1000 genomes]
rs1723497	0.90[EUR][1000 genomes]
rs1723498	0.90[EUR][1000 genomes]
rs1723499	0.90[EUR][1000 genomes]
rs1723500	0.90[EUR][1000 genomes]
rs1723503	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1723504	0.85[EUR][1000 genomes]
rs1723508	0.85[EUR][1000 genomes]
rs1723528	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1723531	0.90[EUR][1000 genomes]
rs1741780	0.90[EUR][1000 genomes]
rs1741782	0.85[EUR][1000 genomes]
rs1741783	0.90[EUR][1000 genomes]
rs1741784	0.84[EUR][1000 genomes]
rs1741786	0.90[EUR][1000 genomes]
rs1741787	0.90[EUR][1000 genomes]
rs1741788	0.90[EUR][1000 genomes]
rs1741789	0.90[EUR][1000 genomes]
rs1741790	0.90[EUR][1000 genomes]
rs1741799	0.85[EUR][1000 genomes]
rs1741805	0.90[EUR][1000 genomes]
rs1741810	0.90[EUR][1000 genomes]
rs1741813	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1779753	0.90[EUR][1000 genomes]
rs1779755	0.90[EUR][1000 genomes]
rs1779756	0.90[EUR][1000 genomes]
rs1779757	0.90[EUR][1000 genomes]
rs1779758	0.90[EUR][1000 genomes]
rs1779760	0.90[EUR][1000 genomes]
rs1936532	0.90[EUR][1000 genomes]
rs2005098	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2474908	0.90[EUR][1000 genomes]
rs2677021	0.85[EUR][1000 genomes]
rs2677022	0.90[EUR][1000 genomes]
rs2677023	0.90[EUR][1000 genomes]
rs2677024	0.81[EUR][1000 genomes]
rs2677026	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2677027	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2677028	0.90[EUR][1000 genomes]
rs2677029	0.90[EUR][1000 genomes]
rs2753069	0.90[EUR][1000 genomes]
rs2753070	0.90[EUR][1000 genomes]
rs2753071	0.90[EUR][1000 genomes]
rs2753072	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2753073	0.90[EUR][1000 genomes]
rs2753074	0.90[EUR][1000 genomes]
rs2800031	0.90[EUR][1000 genomes]
rs2800034	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2800035	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2800036	0.90[EUR][1000 genomes]
rs4710426	0.90[EUR][1000 genomes]
rs6454169	0.90[EUR][1000 genomes]
rs6933112	0.90[EUR][1000 genomes]
rs732948	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7381742	0.85[EUR][1000 genomes]
rs7382020	0.90[EUR][1000 genomes]
rs7750785	0.90[EUR][1000 genomes]
rs7752941	0.90[EUR][1000 genomes]
rs7757686	0.90[EUR][1000 genomes]
rs7758841	0.90[EUR][1000 genomes]
rs7771677	0.90[EUR][1000 genomes]
rs824373	0.90[EUR][1000 genomes]
rs824374	0.90[EUR][1000 genomes]
rs824375	0.90[EUR][1000 genomes]
rs824376	0.90[EUR][1000 genomes]
rs824377	0.90[EUR][1000 genomes]
rs824378	0.90[EUR][1000 genomes]
rs824379	0.90[EUR][1000 genomes]
rs824380	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs824381	0.90[EUR][1000 genomes]
rs824383	0.90[EUR][1000 genomes]
rs824385	0.90[EUR][1000 genomes]
rs824387	0.90[EUR][1000 genomes]
rs824390	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs824391	0.90[EUR][1000 genomes]
rs824392	0.90[EUR][1000 genomes]
rs824393	0.90[EUR][1000 genomes]
rs824394	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs860349	0.90[EUR][1000 genomes]
rs861113	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs865415	0.90[EUR][1000 genomes]
rs865416	0.90[EUR][1000 genomes]
rs940741	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9767041	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1031548	chr6:64026862-64102045	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030651	chr6:64028392-64102045	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64076400-64113600	Weak transcription	Placenta	Placenta
2	chr6:64089400-64093200	Weak transcription	Liver	Liver
3	chr6:64089600-64093800	Weak transcription	A549	lung
4	chr6:64091200-64095000	Enhancers	Fetal Intestine Large	intestine
5	chr6:64091600-64094200	Enhancers	Fetal Intestine Small	intestine
6	chr6:64091800-64095600	Enhancers	HepG2	liver
7	chr6:64093000-64093400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood

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