Variant report

Variant	rs7764271
Chromosome Location	chr6:100942138-100942139
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100930706..100932769-chr6:100940646..100942304,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17060653	0.89[ASN][1000 genomes]
rs1894562	0.89[ASN][1000 genomes]
rs241814	1.00[CEU][hapmap]
rs28642386	0.89[ASN][1000 genomes]
rs6907007	0.86[AFR][1000 genomes]
rs6922126	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6934173	0.90[AFR][1000 genomes]
rs6942018	0.86[YRI][hapmap]
rs7755275	0.90[AFR][1000 genomes]
rs7766621	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs9373506	0.90[ASN][1000 genomes]
rs9377016	0.89[ASN][1000 genomes]
rs9386163	0.90[ASN][1000 genomes]
rs9390396	0.89[ASN][1000 genomes]
rs9390404	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9403816	0.91[ASN][1000 genomes]
rs9485089	0.85[AFR][1000 genomes]
rs9485091	0.86[AFR][1000 genomes]
rs9485097	0.90[AFR][1000 genomes]
rs9485098	0.90[AFR][1000 genomes]
rs9497562	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100940600-100942400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:100940600-100942400	Enhancers	HMEC	breast

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