Variant report
| Variant | rs7764312 |
|---|---|
| Chromosome Location | chr6:150451038-150451039 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:150450612..150452742-chr6:150455452..150457364,2 | K562 | blood: | |
| 2 | chr6:150449726..150451352-chr6:150464010..150466686,2 | K562 | blood: | |
| 3 | chr6:150449407..150453183-chr6:150455080..150457364,4 | K562 | blood: | |
| 4 | chr6:150450031..150451577-chr6:150457314..150459716,2 | MCF-7 | breast: | |
| 5 | chr6:150449726..150452663-chr6:150462298..150465510,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000198729 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1107835 | 0.94[ASN][1000 genomes] |
| rs1886361 | 0.97[ASN][1000 genomes] |
| rs2002636 | 0.97[ASN][1000 genomes] |
| rs2050387 | 0.97[ASN][1000 genomes] |
| rs2050388 | 0.97[ASN][1000 genomes] |
| rs2065714 | 0.87[ASN][1000 genomes] |
| rs2065715 | 0.87[ASN][1000 genomes] |
| rs35345067 | 0.97[ASN][1000 genomes] |
| rs35455053 | 0.91[CHB][hapmap] |
| rs57900356 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs61024066 | 0.97[ASN][1000 genomes] |
| rs7747523 | 0.97[ASN][1000 genomes] |
| rs7747684 | 0.97[ASN][1000 genomes] |
| rs7755565 | 0.81[EUR][1000 genomes] |
| rs7758377 | 0.97[ASN][1000 genomes] |
| rs7769185 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9371775 | 0.86[TSI][hapmap] |
| rs9689113 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886770 | chr6:150395424-150499889 | Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026690 | chr6:150419115-150485583 | Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:150440600-150452600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
