Variant report

Variant	rs7767012
Chromosome Location	chr6:64115373-64115374
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1010057	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1320419	0.91[AFR][1000 genomes]
rs1404779	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1464865	0.84[AMR][1000 genomes]
rs1464866	0.84[AMR][1000 genomes]
rs1525355	0.91[AFR][1000 genomes]
rs1525361	0.88[ASN][1000 genomes]
rs1711906	0.92[AFR][1000 genomes]
rs1711928	0.84[AMR][1000 genomes]
rs1723497	0.84[AMR][1000 genomes]
rs1723499	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1723500	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1723503	0.91[AFR][1000 genomes]
rs1723527	0.88[ASN][1000 genomes]
rs1723528	0.91[AFR][1000 genomes]
rs1741784	0.84[EUR][1000 genomes]
rs1741805	0.84[AMR][1000 genomes]
rs1741810	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1741813	0.91[AFR][1000 genomes]
rs2005098	0.91[AFR][1000 genomes]
rs2677026	0.91[AFR][1000 genomes]
rs2677027	0.91[AFR][1000 genomes]
rs2677028	0.84[AMR][1000 genomes]
rs2677029	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2753071	0.95[AFR][1000 genomes]
rs2753072	0.91[AFR][1000 genomes]
rs2753073	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2800031	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2800033	0.91[AFR][1000 genomes]
rs2800034	0.89[AFR][1000 genomes]
rs2800035	0.91[AFR][1000 genomes]
rs56212786	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732948	0.90[AFR][1000 genomes]
rs7750785	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs824374	0.84[AMR][1000 genomes]
rs824375	0.84[AMR][1000 genomes]
rs824376	0.84[AMR][1000 genomes]
rs824377	0.84[AMR][1000 genomes]
rs824379	0.84[AMR][1000 genomes]
rs824381	0.84[ASN][1000 genomes]
rs824391	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs824392	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs824393	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs861113	0.88[AFR][1000 genomes]
rs865415	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs865416	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs940741	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64114600-64120400	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links