Variant report

Variant	rs7767473
Chromosome Location	chr6:64355159-64355160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr6:64354699-64355308	MCF10A-Er-Src	breast:	n/a	chr6:64355109-64355117
2	POLR2A	chr6:64355011-64355211	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr6:64354857-64355298	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr6:64354670-64355296	MCF10A-Er-Src	breast:	n/a	chr6:64355109-64355117
5	FOS	chr6:64354559-64355277	MCF10A-Er-Src	breast:	n/a	chr6:64355109-64355117
6	E2F4	chr6:64354809-64355160	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr6:64354788-64355223	MCF10A-Er-Src	breast:	n/a	n/a
8	POLR2A	chr6:64354821-64355362	MCF10A-Er-Src	breast:	n/a	n/a
9	STAT3	chr6:64354785-64355220	MCF10A-Er-Src	breast:	n/a	n/a
10	MYC	chr6:64354711-64355256	MCF10A-Er-Src	breast:	n/a	chr6:64355108-64355117
11	FOS	chr6:64354628-64355362	MCF10A-Er-Src	breast:	n/a	chr6:64355109-64355117
12	STAT3	chr6:64354833-64355264	MCF10A-Er-Src	breast:	n/a	n/a
13	MYC	chr6:64354696-64355228	MCF10A-Er-Src	breast:	n/a	chr6:64355108-64355117

No.	Distal block	Cell Line	Cell type
1	chr6:64344409..64347843-chr6:64354565..64357497,3	MCF-7	breast:
2	chr6:64281678..64284147-chr6:64351615..64355386,3	MCF-7	breast:
3	chr6:64352758..64355671-chr6:64367534..64370058,2	MCF-7	breast:
4	chr12:56509567..56511982-chr6:64353367..64355484,2	MCF-7	breast:
5	chr6:64281185..64283276-chr6:64354307..64357055,2	K562	blood:

Variant related genes	Relation type
PHF3	TF binding region
ENSG00000135482	Chromatin interaction
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction
ENSG00000229117	Chromatin interaction
ENSG00000118482	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10455430	0.80[ASN][1000 genomes]
rs10485358	0.84[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1057530	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10755432	0.92[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10943975	0.84[ASN][1000 genomes]
rs1212828	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12190601	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12198142	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12205302	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1575054	0.85[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs170347	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1884117	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs319920	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[ASN][1000 genomes]
rs319923	0.85[ASN][1000 genomes]
rs319924	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.85[ASN][1000 genomes]
rs319925	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4562122	0.84[ASN][1000 genomes]
rs4710437	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4710440	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs62412950	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67875483	0.85[ASN][1000 genomes]
rs6904818	0.82[ASN][1000 genomes]
rs6921180	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6932538	0.88[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64347000-64370600	Weak transcription	Left Ventricle	heart
2	chr6:64347000-64383200	Weak transcription	Esophagus	oesophagus
3	chr6:64347000-64422400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:64347200-64356400	Weak transcription	Aorta	Aorta
5	chr6:64347400-64357000	Weak transcription	Placenta	Placenta
6	chr6:64347400-64358400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:64347400-64359600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:64347400-64370800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:64347600-64365200	Weak transcription	Fetal Stomach	stomach
10	chr6:64347600-64381000	Weak transcription	Fetal Thymus	thymus
11	chr6:64347800-64355400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:64347800-64357000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:64347800-64358400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:64347800-64361400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:64347800-64370600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:64347800-64386400	Weak transcription	Colonic Mucosa	Colon
17	chr6:64348000-64356600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:64348600-64355800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:64348800-64355200	Enhancers	Brain Substantia Nigra	brain
20	chr6:64349400-64356200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr6:64349400-64370600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:64350000-64363000	Weak transcription	Brain Germinal Matrix	brain
23	chr6:64350200-64359800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:64350200-64374400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr6:64350200-64381200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:64350200-64382800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:64350400-64358000	Weak transcription	Fetal Kidney	kidney
28	chr6:64350400-64359200	Weak transcription	Stomach Mucosa	stomach
29	chr6:64350400-64368400	Weak transcription	Fetal Brain Male	brain
30	chr6:64350400-64369600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr6:64350600-64359200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:64350600-64359200	Weak transcription	HSMMtube	muscle
33	chr6:64350600-64373200	Weak transcription	HSMM	muscle
34	chr6:64351000-64359000	Weak transcription	NHLF	lung
35	chr6:64351000-64359200	Weak transcription	Fetal Lung	lung
36	chr6:64351000-64360000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:64351000-64373200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:64351200-64356400	Weak transcription	Fetal Intestine Large	intestine
39	chr6:64351200-64357000	Weak transcription	Small Intestine	intestine
40	chr6:64351200-64358200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:64351200-64359200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:64351200-64359200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr6:64351200-64385000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:64351200-64405000	Weak transcription	Thymus	Thymus
45	chr6:64351400-64356600	Weak transcription	Psoas Muscle	Psoas
46	chr6:64351400-64359000	Weak transcription	Liver	Liver
47	chr6:64351400-64359200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr6:64351400-64369400	Weak transcription	Fetal Heart	heart
49	chr6:64352200-64362200	Weak transcription	Fetal Muscle Leg	muscle
50	chr6:64352200-64365600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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