Variant report

Variant	rs7769092
Chromosome Location	chr6:56110737-56110738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12528835	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1925157	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1925164	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2397214	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3857613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4355611	0.88[ASN][1000 genomes]
rs724677	1.00[YRI][hapmap]
rs7765410	0.88[ASN][1000 genomes]
rs9357898	0.82[ASN][1000 genomes]
rs9357899	0.88[ASN][1000 genomes]
rs9396187	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56100200-56111600	Weak transcription	Right Atrium	heart
2	chr6:56103600-56111600	Weak transcription	Left Ventricle	heart
3	chr6:56106000-56111400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:56106200-56111000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:56106200-56111600	Weak transcription	Ovary	ovary
6	chr6:56106400-56111600	Weak transcription	Psoas Muscle	Psoas
7	chr6:56106600-56111000	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:56106600-56111600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:56106600-56112000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:56107000-56111400	Weak transcription	Brain Substantia Nigra	brain
11	chr6:56107200-56111200	Enhancers	Colon Smooth Muscle	Colon
12	chr6:56107400-56111800	Weak transcription	HMEC	breast
13	chr6:56108200-56111600	Weak transcription	A549	lung
14	chr6:56108400-56111400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:56108600-56111400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:56108800-56110800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:56108800-56111000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:56108800-56111200	Enhancers	Rectal Smooth Muscle	rectum
19	chr6:56109000-56110800	Enhancers	NHEK	skin
20	chr6:56109000-56111000	Weak transcription	Liver	Liver
21	chr6:56109000-56111200	Weak transcription	NHLF	lung
22	chr6:56109200-56111400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:56109200-56111400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:56109200-56111600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:56109200-56111800	Weak transcription	Esophagus	oesophagus
26	chr6:56109400-56111600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:56109400-56113000	Active TSS	Aorta	Aorta
28	chr6:56109600-56110800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:56109600-56111400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:56109800-56111000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:56109800-56111600	Enhancers	NHDF-Ad	bronchial
32	chr6:56110000-56110800	Flanking Active TSS	Fetal Lung	lung
33	chr6:56110200-56110800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:56110200-56111200	Active TSS	Stomach Smooth Muscle	stomach
35	chr6:56110200-56111800	Active TSS	Fetal Stomach	stomach
36	chr6:56110400-56110800	Flanking Active TSS	Fetal Muscle Leg	muscle
37	chr6:56110400-56111400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
38	chr6:56110400-56111800	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr6:56110400-56112000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr6:56110400-56112000	Active TSS	Fetal Muscle Trunk	muscle
41	chr6:56110400-56112000	Enhancers	Stomach Mucosa	stomach
42	chr6:56110400-56112000	Enhancers	HSMMtube	muscle
43	chr6:56110400-56112800	Active TSS	Fetal Kidney	kidney
44	chr6:56110600-56110800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
45	chr6:56110600-56110800	Enhancers	Adipose Nuclei	Adipose
46	chr6:56110600-56110800	Enhancers	Small Intestine	intestine
47	chr6:56110600-56111000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
48	chr6:56110600-56111000	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr6:56110600-56111000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:56110600-56111200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

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