Variant report

Variant	rs7771228
Chromosome Location	chr6:80774236-80774237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs151643	0.82[AFR][1000 genomes]
rs16891543	1.00[CEU][hapmap]
rs16891547	1.00[CEU][hapmap]
rs16891556	1.00[CEU][hapmap]
rs187066	1.00[CEU][hapmap];0.81[LWK][hapmap]
rs192130	1.00[CEU][hapmap]
rs239510	1.00[CEU][hapmap]
rs239557	1.00[CEU][hapmap]
rs239559	1.00[CEU][hapmap]
rs239561	1.00[CEU][hapmap]
rs240215	1.00[CEU][hapmap];0.83[AFR][1000 genomes]
rs240223	0.83[AFR][1000 genomes]
rs2490225	1.00[CEU][hapmap]
rs2490231	1.00[CEU][hapmap]
rs2490237	1.00[CEU][hapmap]
rs2490238	1.00[CEU][hapmap]
rs2490247	1.00[CEU][hapmap]
rs2505931	1.00[CEU][hapmap]
rs2505934	1.00[CEU][hapmap]
rs2505936	1.00[CEU][hapmap]
rs2505941	1.00[CEU][hapmap]
rs2997392	1.00[CEU][hapmap]
rs6454141	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981160	chr6:80772505-80775545	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80764600-80777200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:80764800-80784400	Weak transcription	Thymus	Thymus
3	chr6:80774200-80774400	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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