Variant report
| Variant | rs7772328 |
|---|---|
| Chromosome Location | chr6:102230734-102230735 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs12333116 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17062456 | 0.80[ASN][1000 genomes] |
| rs17062569 | 0.86[ASN][1000 genomes] |
| rs2518199 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2791830 | 0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2791831 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2791836 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs34747916 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs56000471 | 0.80[ASN][1000 genomes] |
| rs56230248 | 0.80[ASN][1000 genomes] |
| rs57847212 | 0.80[ASN][1000 genomes] |
| rs60199869 | 0.86[ASN][1000 genomes] |
| rs6924758 | 0.80[ASN][1000 genomes] |
| rs73512746 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73512772 | 0.86[ASN][1000 genomes] |
| rs73512776 | 0.86[ASN][1000 genomes] |
| rs73512781 | 0.86[ASN][1000 genomes] |
| rs73761411 | 0.80[ASN][1000 genomes] |
| rs73761412 | 0.80[ASN][1000 genomes] |
| rs73761417 | 0.80[ASN][1000 genomes] |
| rs7739324 | 0.80[ASN][1000 genomes] |
| rs7754697 | 0.86[ASN][1000 genomes] |
| rs7760050 | 0.80[ASN][1000 genomes] |
| rs9498692 | 0.80[ASN][1000 genomes] |
| rs9498712 | 0.86[ASN][1000 genomes] |
| rs9498714 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9498715 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9498719 | 0.86[ASN][1000 genomes] |
| rs9498721 | 0.86[ASN][1000 genomes] |
| rs9498725 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3384771 | chr6:101996253-102283808 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032499 | chr6:102069885-102720998 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv1819438 | chr6:102211675-102279200 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:102227600-102236000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
