Variant report
| Variant | rs7774404 |
|---|---|
| Chromosome Location | chr6:150717842-150717843 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:150717285..150719589-chr6:150720584..150722449,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs11962096 | 0.91[ASN][1000 genomes] |
| rs12530375 | 0.93[ASN][1000 genomes] |
| rs1416481 | 0.87[ASN][1000 genomes] |
| rs1556881 | 0.87[ASN][1000 genomes] |
| rs2076285 | 0.91[ASN][1000 genomes] |
| rs2076286 | 0.91[ASN][1000 genomes] |
| rs2076287 | 0.87[ASN][1000 genomes] |
| rs2076288 | 0.87[ASN][1000 genomes] |
| rs2076289 | 0.87[ASN][1000 genomes] |
| rs2076290 | 0.87[ASN][1000 genomes] |
| rs2076291 | 0.87[ASN][1000 genomes] |
| rs2076292 | 0.87[ASN][1000 genomes] |
| rs3734734 | 0.87[ASN][1000 genomes] |
| rs3823259 | 0.90[ASN][1000 genomes] |
| rs3823260 | 0.91[ASN][1000 genomes] |
| rs4407723 | 0.87[ASN][1000 genomes] |
| rs62432506 | 0.81[ASN][1000 genomes] |
| rs62432511 | 0.87[ASN][1000 genomes] |
| rs62432540 | 0.92[ASN][1000 genomes] |
| rs62432541 | 0.92[ASN][1000 genomes] |
| rs62432542 | 0.91[ASN][1000 genomes] |
| rs6909655 | 0.91[ASN][1000 genomes] |
| rs6921360 | 0.91[ASN][1000 genomes] |
| rs73617698 | 0.91[ASN][1000 genomes] |
| rs7745569 | 0.83[ASN][1000 genomes] |
| rs7761906 | 0.83[ASN][1000 genomes] |
| rs7762616 | 0.93[ASN][1000 genomes] |
| rs7769542 | 0.87[ASN][1000 genomes] |
| rs7770389 | 0.85[ASN][1000 genomes] |
| rs7774077 | 0.92[ASN][1000 genomes] |
| rs9322259 | 0.87[ASN][1000 genomes] |
| rs9371437 | 0.87[ASN][1000 genomes] |
| rs9383808 | 0.83[ASN][1000 genomes] |
| rs9384472 | 0.84[ASN][1000 genomes] |
| rs9384473 | 0.85[ASN][1000 genomes] |
| rs9384474 | 0.85[ASN][1000 genomes] |
| rs9384476 | 0.87[ASN][1000 genomes] |
| rs9397302 | 0.87[ASN][1000 genomes] |
| rs9397303 | 0.87[ASN][1000 genomes] |
| rs9397944 | 0.87[ASN][1000 genomes] |
| rs9397954 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2763602 | chr6:150581193-150720666 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:150712200-150719200 | Weak transcription | Fetal Intestine Small | intestine |
| 2 | chr6:150716400-150718200 | Weak transcription | Liver | Liver |
