Variant report

Variant	rs777566
Chromosome Location	chr2:128212137-128212138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:128143917..128147453-chr2:128209353..128212433,7	MCF-7	breast:
2	chr2:128063086..128065825-chr2:128211149..128213069,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169967	Chromatin interaction
ENSG00000236682	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10928763	1.00[MEX][hapmap]
rs11899533	1.00[MEX][hapmap]
rs1878843	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs777565	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8179521	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875014	chr2:128178415-128328375	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv524607	chr2:128196424-128218364	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128204800-128213000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:128204800-128225600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr2:128205400-128223600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:128205400-128223800	Weak transcription	Placenta	Placenta
5	chr2:128205800-128223600	Weak transcription	Thymus	Thymus
6	chr2:128205800-128223800	Weak transcription	Lung	lung
7	chr2:128206000-128224000	Weak transcription	Psoas Muscle	Psoas
8	chr2:128206200-128237800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:128206600-128212600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:128206600-128212600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:128206800-128216600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:128206800-128233600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:128207000-128221000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:128207400-128212800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:128207600-128212600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:128207800-128212600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr2:128207800-128212800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:128208000-128212600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr2:128208400-128212600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr2:128208400-128212800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:128208400-128213200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr2:128208400-128238800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr2:128208800-128226000	Weak transcription	Brain Anterior Caudate	brain
24	chr2:128209000-128238000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr2:128209200-128221000	Weak transcription	Fetal Stomach	stomach
26	chr2:128209200-128223600	Weak transcription	Primary B cells from cord blood	blood
27	chr2:128209200-128223600	Weak transcription	Aorta	Aorta
28	chr2:128209200-128225400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr2:128209200-128237600	Weak transcription	Adipose Nuclei	Adipose
30	chr2:128209400-128223600	Weak transcription	Spleen	Spleen
31	chr2:128209600-128214400	Weak transcription	HSMMtube	muscle
32	chr2:128210000-128212600	Weak transcription	Dnd41	blood
33	chr2:128210000-128221800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr2:128210000-128223600	Weak transcription	Brain Substantia Nigra	brain
35	chr2:128210000-128226400	Weak transcription	Esophagus	oesophagus
36	chr2:128210000-128227200	Weak transcription	Left Ventricle	heart
37	chr2:128210000-128237600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr2:128210200-128238000	Weak transcription	Colon Smooth Muscle	Colon
39	chr2:128210400-128222200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr2:128210600-128215400	Strong transcription	Primary T cells from cord blood	blood
41	chr2:128210600-128225200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr2:128210800-128212600	Enhancers	A549	lung
43	chr2:128210800-128213000	Strong transcription	Stomach Smooth Muscle	stomach
44	chr2:128210800-128213400	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr2:128210800-128213600	Enhancers	Pancreas	Pancrea
46	chr2:128210800-128214000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr2:128210800-128214000	Flanking Active TSS	HepG2	liver
48	chr2:128211000-128212200	Enhancers	Liver	Liver
49	chr2:128211200-128213000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr2:128211200-128215000	Enhancers	Fetal Intestine Large	intestine

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