Variant report

Variant	rs7775710
Chromosome Location	chr6:12951578-12951579
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10948372	0.94[EUR][1000 genomes]
rs11755825	1.00[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11756003	0.90[EUR][1000 genomes]
rs13194360	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34175679	0.90[EUR][1000 genomes]
rs35266083	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36049381	0.90[EUR][1000 genomes]
rs4129937	0.85[GIH][hapmap]
rs4236093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4331981	0.93[GIH][hapmap]
rs4588689	0.89[EUR][1000 genomes]
rs4715045	0.91[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap]
rs59778206	0.88[ASN][1000 genomes]
rs62386820	0.91[EUR][1000 genomes]
rs62386821	0.90[EUR][1000 genomes]
rs6458577	0.88[ASN][1000 genomes]
rs66820937	0.90[EUR][1000 genomes]
rs6906017	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6906890	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6923878	1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[ASN][1000 genomes]
rs6929107	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757180	0.93[ASN][1000 genomes]
rs7769758	0.93[ASN][1000 genomes]
rs7775566	1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs9395336	0.82[GIH][hapmap]
rs9473070	0.90[ASN][1000 genomes]
rs9473082	0.93[ASN][1000 genomes]
rs9473086	0.81[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5202	chr6:12916229-12958517	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7775710	HIVEP1	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12930400-12951800	Weak transcription	Fetal Brain Female	brain
2	chr6:12943600-12951800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:12945600-12954600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:12945600-12957000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:12950600-12957000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:12950800-12951800	Enhancers	Stomach Smooth Muscle	stomach
7	chr6:12950800-12956800	Weak transcription	Primary B cells from cord blood	blood
8	chr6:12951000-12952600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:12951000-12953200	Enhancers	Brain Germinal Matrix	brain
10	chr6:12951000-12953200	Enhancers	Colon Smooth Muscle	Colon
11	chr6:12951000-12953400	Enhancers	Fetal Stomach	stomach
12	chr6:12951000-12953800	Enhancers	Fetal Heart	heart
13	chr6:12951400-12952400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:12951400-12952600	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links