Variant report

Variant	rs7775876
Chromosome Location	chr6:102225817-102225818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10485276	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11156157	0.85[ASN][1000 genomes]
rs1325060	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1340266	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1361444	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1408768	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17062480	0.91[ASN][1000 genomes]
rs2038842	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2039853	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2147714	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2399636	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2518193	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2518270	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2764218	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2764220	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2764222	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2764223	0.83[EUR][1000 genomes]
rs2764226	0.83[EUR][1000 genomes]
rs2764228	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2764229	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2791826	0.80[ASN][1000 genomes]
rs2791827	0.80[ASN][1000 genomes]
rs2791832	0.80[ASN][1000 genomes]
rs2791834	0.80[ASN][1000 genomes]
rs4839802	0.81[ASN][1000 genomes]
rs4840195	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4840196	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4840197	0.83[ASN][1000 genomes]
rs7749469	0.82[ASN][1000 genomes]
rs7754022	0.84[ASN][1000 genomes]
rs7775085	0.84[ASN][1000 genomes]
rs9322609	0.84[ASN][1000 genomes]
rs9377306	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9377307	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9377308	0.81[ASN][1000 genomes]
rs9386291	0.82[ASN][1000 genomes]
rs9386293	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9390784	0.83[ASN][1000 genomes]
rs9390785	0.81[ASN][1000 genomes]
rs9399728	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9399732	0.92[ASN][1000 genomes]
rs9399733	0.80[ASN][1000 genomes]
rs9404143	0.82[ASN][1000 genomes]
rs9404145	0.91[ASN][1000 genomes]
rs9404148	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9485542	0.86[ASN][1000 genomes]
rs9498691	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9498693	0.82[ASN][1000 genomes]
rs9498694	0.84[ASN][1000 genomes]
rs9498695	0.84[ASN][1000 genomes]
rs9498696	0.86[ASN][1000 genomes]
rs9498697	0.86[ASN][1000 genomes]
rs9498698	0.91[ASN][1000 genomes]
rs9498701	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9498702	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9498703	0.86[ASN][1000 genomes]
rs9498713	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1819438	chr6:102211675-102279200	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102224600-102226000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:102224600-102226000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:102224600-102226000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:102224800-102226000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:102224800-102226000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:102225200-102226000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:102225800-102227200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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