Variant report

Variant	rs7775901
Chromosome Location	chr6:13052693-13052694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11751831	0.80[CEU][hapmap]
rs11755663	1.00[JPT][hapmap]
rs12526453	1.00[JPT][hapmap]
rs12530250	1.00[JPT][hapmap]
rs13201878	1.00[JPT][hapmap]
rs13220463	1.00[JPT][hapmap]
rs1332841	1.00[JPT][hapmap]
rs1360579	1.00[JPT][hapmap]
rs17323391	1.00[JPT][hapmap]
rs17679501	1.00[JPT][hapmap]
rs1937774	0.86[GIH][hapmap]
rs2183072	1.00[JPT][hapmap]
rs28360598	0.86[ASN][1000 genomes]
rs35241555	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35684248	0.86[ASN][1000 genomes]
rs4130157	0.92[GIH][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4131857	0.87[CEU][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236098	1.00[ASN][1000 genomes]
rs4273676	0.86[GIH][hapmap];0.82[TSI][hapmap]
rs4329096	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs4331981	1.00[JPT][hapmap]
rs4389765	0.86[GIH][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs4537139	0.86[GIH][hapmap]
rs4616991	0.81[EUR][1000 genomes]
rs4711857	1.00[JPT][hapmap]
rs4711858	1.00[JPT][hapmap]
rs4714946	1.00[JPT][hapmap]
rs4715065	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs4715068	0.81[EUR][1000 genomes]
rs4715077	0.92[GIH][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4715088	0.85[EUR][1000 genomes]
rs62389460	0.85[AFR][1000 genomes]
rs6458624	0.81[EUR][1000 genomes]
rs6907388	1.00[JPT][hapmap]
rs6907651	0.81[EUR][1000 genomes]
rs6912487	0.81[EUR][1000 genomes]
rs6918053	0.86[GIH][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs6920793	0.82[EUR][1000 genomes]
rs6936052	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739181	1.00[JPT][hapmap]
rs7755806	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7762659	0.81[EUR][1000 genomes]
rs7762786	0.80[CEU][hapmap]
rs9349440	0.81[EUR][1000 genomes]
rs9369762	0.81[EUR][1000 genomes]
rs9472777	1.00[JPT][hapmap]
rs9472786	1.00[JPT][hapmap]
rs9473086	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7775901	HIVEP1	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13029800-13056400	Weak transcription	Pancreas	Pancrea
2	chr6:13030000-13056400	Weak transcription	Brain Germinal Matrix	brain
3	chr6:13038200-13053400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:13039400-13054800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:13039400-13071600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:13040000-13058000	Weak transcription	Fetal Brain Male	brain
7	chr6:13045000-13053000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:13045200-13053400	Weak transcription	Brain Anterior Caudate	brain
9	chr6:13046400-13053000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:13048400-13063400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:13048600-13053600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:13048600-13058000	Weak transcription	Lung	lung
13	chr6:13048800-13053000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:13050200-13053800	Enhancers	Fetal Heart	heart
15	chr6:13050600-13054200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:13051000-13053400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:13051000-13053600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:13051400-13054000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:13052000-13053200	Weak transcription	Left Ventricle	heart
20	chr6:13052000-13053400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:13052200-13060600	Weak transcription	Aorta	Aorta
22	chr6:13052400-13053200	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:13052400-13066600	Weak transcription	Right Ventricle	heart
24	chr6:13052600-13063400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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