Variant report

Variant	rs7776498
Chromosome Location	chr7:101760750-101760751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101754295..101756100-chr7:101760007..101761517,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10215830	0.91[LWK][hapmap]
rs10231704	1.00[CHB][hapmap]
rs10243429	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245459	1.00[CHB][hapmap]
rs10246310	1.00[CHB][hapmap]
rs10249739	1.00[CHB][hapmap]
rs10252737	1.00[CHB][hapmap]
rs10259603	1.00[CHB][hapmap]
rs10259857	0.95[CEU][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261132	1.00[CHB][hapmap]
rs10271376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271680	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277680	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953357	1.00[CHB][hapmap]
rs11769397	1.00[CHB][hapmap]
rs11975153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975663	1.00[CHB][hapmap]
rs12537526	1.00[CHB][hapmap]
rs12538286	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538988	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12539349	1.00[CHB][hapmap]
rs12539846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734886	0.87[ASN][1000 genomes]
rs17408612	1.00[CHB][hapmap]
rs17408640	1.00[CHB][hapmap]
rs17409879	1.00[CHB][hapmap]
rs17410356	1.00[CHB][hapmap]
rs17487076	1.00[CHB][hapmap]
rs17487672	1.00[CHB][hapmap]
rs17495148	1.00[CHB][hapmap]
rs17496657	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17498402	0.80[EUR][1000 genomes]
rs2268030	0.81[EUR][1000 genomes]
rs28401723	1.00[ASN][1000 genomes]
rs28603325	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs382934	0.84[CEU][hapmap]
rs55851631	0.80[ASN][1000 genomes]
rs59220714	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465843	1.00[CHB][hapmap]
rs6465850	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67245174	0.86[ASN][1000 genomes]
rs6959475	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973312	1.00[CHB][hapmap]
rs73187803	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187816	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187849	0.80[EUR][1000 genomes]
rs73187850	0.80[EUR][1000 genomes]
rs7780631	1.00[CHB][hapmap]
rs7797764	1.00[CHB][hapmap]
rs7798358	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801220	0.85[CEU][hapmap]
rs7805379	1.00[CHB][hapmap]
rs7807344	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9655774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101738400-101760800	Weak transcription	NHDF-Ad	bronchial
3	chr7:101738600-101763600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr7:101738800-101763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
6	chr7:101739200-101763400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr7:101740400-101763400	Strong transcription	Dnd41	blood
8	chr7:101740400-101764000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:101741000-101765000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:101741600-101764800	Weak transcription	Stomach Mucosa	stomach
11	chr7:101744600-101765000	Weak transcription	HUVEC	blood vessel
12	chr7:101746000-101765000	Weak transcription	HMEC	breast
13	chr7:101746600-101764200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:101747800-101762800	Weak transcription	Fetal Kidney	kidney
15	chr7:101748600-101765000	Weak transcription	NHEK	skin
16	chr7:101750200-101771000	Weak transcription	Fetal Heart	heart
17	chr7:101751600-101764800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr7:101753400-101763600	Strong transcription	Duodenum Mucosa	Duodenum
19	chr7:101753600-101761200	Strong transcription	Liver	Liver
20	chr7:101754400-101764200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:101754600-101765000	Strong transcription	Fetal Intestine Small	intestine
22	chr7:101754800-101762800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:101754800-101764200	Strong transcription	Thymus	Thymus
24	chr7:101755200-101762600	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:101755200-101765000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr7:101755200-101787000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr7:101755400-101762400	Strong transcription	Fetal Stomach	stomach
28	chr7:101755400-101765000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:101755400-101773200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:101756000-101761400	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr7:101756200-101763600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:101756200-101764000	Strong transcription	Fetal Intestine Large	intestine
33	chr7:101756400-101761400	Strong transcription	Stomach Smooth Muscle	stomach
34	chr7:101756400-101763400	Strong transcription	Spleen	Spleen
35	chr7:101756600-101761400	Strong transcription	Fetal Lung	lung
36	chr7:101756600-101763000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:101756800-101761800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr7:101756800-101762000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:101756800-101762200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:101757000-101761200	Strong transcription	Lung	lung
41	chr7:101757200-101763800	Strong transcription	Primary T cells from cord blood	blood
42	chr7:101758400-101761000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:101758400-101761000	Strong transcription	Colon Smooth Muscle	Colon
44	chr7:101758400-101763600	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr7:101758600-101761200	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr7:101758600-101761400	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr7:101758600-101761400	Strong transcription	Gastric	stomach
48	chr7:101758800-101760800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:101759000-101761200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr7:101759200-101760800	Weak transcription	Osteobl	bone

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