Variant report

Variant	rs7776707
Chromosome Location	chr7:104605530-104605531
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104605295..104607356-chr7:105027703..105029896,2	MCF-7	breast:
2	chr7:104598070..104600552-chr7:104603554..104605680,2	MCF-7	breast:
3	chr7:104596381..104598506-chr7:104603345..104606110,2	K562	blood:
4	chr7:104595365..104601201-chr7:104602410..104607281,8	K562	blood:

Variant related genes	Relation type
ENSG00000135250	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10266287	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487150	0.91[ASW][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs10953468	1.00[JPT][hapmap]
rs1142	0.88[JPT][hapmap]
rs1144	1.00[JPT][hapmap]
rs11760317	0.81[EUR][1000 genomes]
rs2192932	1.00[ASW][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299304	0.89[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs2430484	0.88[ASN][1000 genomes]
rs2430486	0.88[ASN][1000 genomes]
rs2470938	0.88[ASN][1000 genomes]
rs2470939	0.88[ASN][1000 genomes]
rs2470940	0.88[ASN][1000 genomes]
rs2470941	0.86[ASN][1000 genomes]
rs2470942	0.84[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs2470943	0.84[CEU][hapmap];0.88[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.83[MKK][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs2470944	0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.89[ASN][1000 genomes]
rs2470945	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.88[ASN][1000 genomes]
rs2470947	0.89[ASN][1000 genomes]
rs2470948	0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs2470949	0.89[ASN][1000 genomes]
rs2470950	0.89[ASN][1000 genomes]
rs3213742	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3823752	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4727614	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6948885	1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[EUR][1000 genomes]
rs6950620	1.00[ASW][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs6955349	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6965384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967587	1.00[JPT][hapmap]
rs7797912	0.91[ASW][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs916705	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104584600-104619000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:104587200-104623600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:104595600-104605600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:104597200-104608200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr7:104597800-104606200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:104598000-104619800	Weak transcription	Primary T cells from cord blood	blood
7	chr7:104598000-104621600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr7:104598200-104611600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:104598200-104620800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr7:104598200-104621400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr7:104598200-104623000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr7:104598400-104607600	Weak transcription	HSMM	muscle
13	chr7:104599000-104617200	Weak transcription	Gastric	stomach
14	chr7:104601400-104605600	Enhancers	Stomach Smooth Muscle	stomach
15	chr7:104601400-104605800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:104601800-104622800	Weak transcription	Thymus	Thymus
17	chr7:104602600-104605600	Enhancers	Colon Smooth Muscle	Colon
18	chr7:104602600-104605600	Enhancers	Osteobl	bone
19	chr7:104602600-104614400	Weak transcription	Placenta	Placenta
20	chr7:104602800-104606600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr7:104602800-104608600	Enhancers	K562	blood
22	chr7:104603000-104605600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:104603000-104605600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr7:104603000-104608400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr7:104603200-104605600	Enhancers	Fetal Stomach	stomach
26	chr7:104603200-104612200	Weak transcription	Colonic Mucosa	Colon
27	chr7:104603400-104607600	Weak transcription	Small Intestine	intestine
28	chr7:104603800-104605600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:104604000-104605600	Enhancers	Fetal Intestine Small	intestine
30	chr7:104604000-104605600	Enhancers	Stomach Mucosa	stomach
31	chr7:104604200-104605600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:104604200-104610200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr7:104604400-104606600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:104604600-104607600	Weak transcription	Lung	lung
35	chr7:104604600-104608000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:104604600-104609200	Weak transcription	Adipose Nuclei	Adipose
37	chr7:104604600-104620200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr7:104604800-104605600	Strong transcription	Primary B cells from cord blood	blood
39	chr7:104604800-104607400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:104604800-104607400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr7:104604800-104607800	Weak transcription	NH-A	brain
42	chr7:104604800-104608000	Weak transcription	Right Atrium	heart
43	chr7:104604800-104611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:104604800-104612200	Weak transcription	Esophagus	oesophagus
45	chr7:104604800-104612200	Weak transcription	Spleen	Spleen
46	chr7:104604800-104612400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr7:104604800-104613200	Weak transcription	Left Ventricle	heart
48	chr7:104604800-104614000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr7:104604800-104617200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr7:104605000-104616800	Weak transcription	Rectal Smooth Muscle	rectum

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